Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_L19
(509 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0107 - 1107976-1108033,1108411-1108638,1110109-1110422,111... 35 0.033
02_01_0174 - 1193696-1193726,1193822-1194175,1194307-1194542,119... 31 0.71
11_06_0610 - 25449085-25453284 30 1.2
04_04_1090 - 30764340-30764704,30765092-30765204,30765414-307656... 29 2.2
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805... 29 2.9
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 28 5.0
05_03_0039 - 7621613-7622695 27 6.6
04_04_1183 - 31537196-31537290,31537665-31537986,31538176-315382... 27 6.6
04_03_0241 - 13243938-13244453,13244538-13246334 27 6.6
01_05_0490 + 22672241-22674679 27 8.8
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389... 27 8.8
>04_01_0107 -
1107976-1108033,1108411-1108638,1110109-1110422,
1110568-1110680,1111740-1111845
Length = 272
Score = 35.1 bits (77), Expect = 0.033
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +1
Query: 247 KQRPTPEYKTKRSPTLENRRKNSPVSDNKKGRSPSVHDRRKRSP 378
+ RP+P+Y +RSP + + SPV+D + RSP RR RSP
Sbjct: 225 RSRPSPDYGRQRSPVYGSYDR-SPVNDRYRSRSPV---RRSRSP 264
>02_01_0174 -
1193696-1193726,1193822-1194175,1194307-1194542,
1194629-1194741,1195963-1196161,1196427-1196513
Length = 339
Score = 30.7 bits (66), Expect = 0.71
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Frame = +1
Query: 121 RENTGSPQYRERKISPSLEHXXXXXXXXXXXXXXXXXXEYMR-KQRPTPEYKT---KRSP 288
+ N SP+ R R SP +Y R ++R +P+Y + SP
Sbjct: 231 KRNGYSPERRGRDRSPDRRDYRGRSASPYGRGRERGSPDYGRGRERGSPDYGRGGDRGSP 290
Query: 289 TLENRRKNSPVSDNK---KGRSPSVHDRRKRSPSPG 387
+ R SP NK +G P+ +DR +R SPG
Sbjct: 291 --DYHRGASPQGGNKGDERGSPPNNYDRERREASPG 324
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 256 PTPEYKTKRSPTLENRRKNSPVSDNKKGRSPSVHDRRKRSPSP 384
PTPE K PT E + P S +SP + + SP P
Sbjct: 588 PTPESKASPPPTPEEYTPSPPKSTPPAEKSPPTPESKASSPPP 630
>04_04_1090 -
30764340-30764704,30765092-30765204,30765414-30765638,
30766432-30766553,30766617-30767174,30769207-30769477,
30772175-30773256
Length = 911
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 344 VHLCMTEEKEVHHQEIKKGIVHLPNVKEREVHLRKFPPEEKRVDPEILK 490
+ +C+TE +++ + ++ + R+V L F PE+K D +ILK
Sbjct: 407 IAICITERRKLKEDPLNFSVLSIVVEVVRQVRLNGFLPEKKNAD-QILK 454
>03_06_0737 +
35879723-35879990,35880105-35880201,35880464-35880591,
35880686-35880767,35880855-35880918,35880930-35881022,
35881120-35881178,35881391-35881826,35882050-35882120,
35882201-35882351
Length = 482
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 262 PEYKTKRSPTLENRRKNSPVSDN--KKGRSPSVHDRRKRS 375
P+ K L+ +RK+S +N G SP HDRRK S
Sbjct: 406 PDTKVIAIAHLDKKRKSSMADENLGHGGSSPDEHDRRKPS 445
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 247 KQRPTPEYKTKRSPTLENRRKNSPVSDNKKGRSPSVHDRRKRSPS 381
K RP+ KT+ S + R+ + SD+ R+ S + R +P+
Sbjct: 142 KTRPSTPTKTRPSTPVRTRQTANSTSDSAAARTTSAQNSRPSTPT 186
>05_03_0039 - 7621613-7622695
Length = 360
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +1
Query: 247 KQRPTPEYKTKRSPTLENRRKNSPVSDNKKGRSPSVHDRRKRSPSP 384
K P PE+K + P E + P + K G P K P P
Sbjct: 135 KPEPKPEHKPEPKPEPEPKPYPKPKPEPKPGPKPEPKPEPKPHPEP 180
>04_04_1183 -
31537196-31537290,31537665-31537986,31538176-31538277,
31538826-31539071,31539385-31539506,31539588-31540344,
31540447-31540770,31540872-31541052,31541208-31541602,
31541877-31541942,31542225-31542377,31542593-31542691,
31542776-31542982,31543432-31543572,31543852-31544019,
31544302-31544395,31544479-31544585,31545140-31545274,
31545549-31545656,31545975-31546049,31546197-31546262,
31546500-31546556,31546678-31546702,31546809-31546889,
31546966-31547080,31547211-31547370,31547444-31547483,
31547599-31547780,31547905-31548234
Length = 1650
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -2
Query: 160 FYVLYTEVIQYFLYGILIYLSLPSL 86
FY+ +E+I L+GIL+ + LPSL
Sbjct: 174 FYLYCSEIIFKLLFGILMVVYLPSL 198
>04_03_0241 - 13243938-13244453,13244538-13246334
Length = 770
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 85 KEKVTKGKLKYRRENTGSPQYRERKIS 165
+E G+ KYRRE T SP+ R+++ S
Sbjct: 400 RESWKHGEAKYRRERTRSPRPRDKENS 426
>01_05_0490 + 22672241-22674679
Length = 812
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 244 RKQRPTPEYKTKRSPTLENRRKNSPVSDNKKGRSPSV 354
++ TPE KT T E RRK+ P + ++ R S+
Sbjct: 242 KRTTTTPEVKTIPVDTYEVRRKSLPPKEERRRRRGSI 278
>01_05_0329 -
21037980-21038378,21038517-21038737,21038827-21038905,
21039002-21039071,21039144-21039255,21039359-21039398,
21039482-21039676,21039925-21040044,21040684-21041106,
21042386-21042928
Length = 733
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/77 (24%), Positives = 35/77 (45%)
Frame = +2
Query: 203 ETREGKGARLRNTCVSRDQLQSIRQKEALP*KIGGKTVRFQITKREGVHLCMTEEKEVHH 382
E +E A L+ ++ D + Q ALP K+ ++ I K+E +T+ E +
Sbjct: 394 EMKETNHAHLQAEFLAPDDCTAGDQNYALPIKVEVESWVADIRKKEAAMQTITDSGEDNS 453
Query: 383 QEIKKGIVHLPNVKERE 433
+ + G +PN + E
Sbjct: 454 RRPRSGDSEIPNSSKLE 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.304 0.124 0.344
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,109,898
Number of Sequences: 37544
Number of extensions: 208572
Number of successful extensions: 354
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
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