Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_L19
(509 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54235-7|CAA90974.3| 611|Caenorhabditis elegans Hypothetical pr... 33 0.091
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 33 0.12
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu... 32 0.21
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 32 0.21
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 31 0.49
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 31 0.49
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 31 0.64
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 30 0.85
U88178-4|AAC24411.1| 460|Caenorhabditis elegans Hypothetical pr... 30 1.1
AF077541-1|AAL77189.1| 803|Caenorhabditis elegans Alpha-catulin... 30 1.1
U55363-10|AAL11103.1| 364|Caenorhabditis elegans Hypothetical p... 29 1.5
Z68319-2|CAA92700.2| 446|Caenorhabditis elegans Hypothetical pr... 29 2.0
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 28 3.4
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z75532-6|CAA99813.2| 330|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z75530-9|CAA99797.2| 330|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z54342-7|CAA91149.1| 460|Caenorhabditis elegans Hypothetical pr... 28 4.5
AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical... 28 4.5
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z68116-11|CAA92176.1| 317|Caenorhabditis elegans Hypothetical p... 27 6.0
Z68114-12|CAA92163.1| 317|Caenorhabditis elegans Hypothetical p... 27 6.0
U00031-1|AAZ82851.1| 330|Caenorhabditis elegans Hypothetical pr... 27 7.9
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 27 7.9
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ... 27 7.9
>Z54235-7|CAA90974.3| 611|Caenorhabditis elegans Hypothetical
protein C09G9.4 protein.
Length = 611
Score = 33.5 bits (73), Expect = 0.091
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +1
Query: 244 RKQRPTPEYKTKRSPTLENRRKNS---PVSDNKKGRSPSVHDRRKRSPSPGN 390
RK EYK +P +EN K+S P + K RSP ++ + P P N
Sbjct: 30 RKSEKVSEYKKVENPDVENFSKSSVRPPPPEPKPQRSPPDREKESKDPQPMN 81
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 33.1 bits (72), Expect = 0.12
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 247 KQRPTPEYKTKRSPTLENRRKNSPVSDNKKGRSPSVHDRR-KRSPSP 384
+ R P+ + S + R S +DN+K RSPS ++ RSPSP
Sbjct: 237 RSRSPPKRSRRESKSKSRSRSRSRSADNRKSRSPSRSPKKVDRSPSP 283
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 244 RKQRPTPEYKTKRSPTLENRRKNSPVSDNKK-GRSPSVHDRRKRSPS 381
R++ + RS + +NR+ SP KK RSPS R RSPS
Sbjct: 246 RRESKSKSRSRSRSRSADNRKSRSPSRSPKKVDRSPS-PPRGSRSPS 291
>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform a
protein.
Length = 1081
Score = 32.3 bits (70), Expect = 0.21
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 244 RKQRPTPEYKTKRSPTLENRRKNSPVSDNKKGRSPSVHDRRK-RSPSPGN 390
RK+R K +PT R +++P ++ RS S +DRRK R PGN
Sbjct: 912 RKRRSDSRSKKSATPTDRRRSRDTPTG-SRSMRSTSPNDRRKSRETPPGN 960
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 32.3 bits (70), Expect = 0.21
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 244 RKQRPTPEYKTKRSPTLENRRKNSPVSDNKKGRSPSVHDRRK-RSPSPGN 390
RK+R K +PT R +++P ++ RS S +DRRK R PGN
Sbjct: 912 RKRRSDSRSKKSATPTDRRRSRDTPTG-SRSMRSTSPNDRRKSRETPPGN 960
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 31.1 bits (67), Expect = 0.49
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 271 KTKRSPTLENRRKNSPVSDNKKGRSPSVHD-RRKRSPSP 384
+ +RSP+ E +RK SD+ R S RR+RSPSP
Sbjct: 490 RRRRSPSPERQRKRRSPSDSPPTRRLSTSPIRRRRSPSP 528
Score = 28.3 bits (60), Expect = 3.4
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Frame = +1
Query: 247 KQRPTPEYKTKRSPTLENR-----RKNSPVSDNKKGR--SPSVHD-RRKRSPSPGN 390
KQR + +RSP+ + RK+SP + GR S SV RR+RSPSP N
Sbjct: 411 KQRQDSPVRRRRSPSSIRKESQRVRKHSP-EQKRNGRHDSRSVSPVRRRRSPSPDN 465
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Frame = +1
Query: 244 RKQRPTPEYK---TKRSPTLENRRKNSP-VSDNKKGRSPSVH-DRRKRSPS 381
R++ P+P+ + +++ + RR++SP V+ ++ RSPS R++RSPS
Sbjct: 457 RRRSPSPDNRQLGSRKQYSPLRRRQSSPMVASPRRRRSPSPERQRKRRSPS 507
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 31.1 bits (67), Expect = 0.49
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 271 KTKRSPTLENRRKNSPVSDNKKGRSPSVHD-RRKRSPSP 384
+ +RSP+ E +RK SD+ R S RR+RSPSP
Sbjct: 490 RRRRSPSPERQRKRRSPSDSPPTRRLSTSPIRRRRSPSP 528
Score = 28.3 bits (60), Expect = 3.4
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Frame = +1
Query: 247 KQRPTPEYKTKRSPTLENR-----RKNSPVSDNKKGR--SPSVHD-RRKRSPSPGN 390
KQR + +RSP+ + RK+SP + GR S SV RR+RSPSP N
Sbjct: 411 KQRQDSPVRRRRSPSSIRKESQRVRKHSP-EQKRNGRHDSRSVSPVRRRRSPSPDN 465
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Frame = +1
Query: 244 RKQRPTPEYK---TKRSPTLENRRKNSP-VSDNKKGRSPSVH-DRRKRSPS 381
R++ P+P+ + +++ + RR++SP V+ ++ RSPS R++RSPS
Sbjct: 457 RRRSPSPDNRQLGSRKQYSPLRRRQSSPMVASPRRRRSPSPERQRKRRSPS 507
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 30.7 bits (66), Expect = 0.64
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 244 RKQRPTPEYKTKRSPTLENRRKNSPVSDNKKGRSPSVHD-RRKRSPSP 384
RK+ +P +T+RSP+ RR+ S S ++ RSP R RSP P
Sbjct: 101 RKRSRSPPRRTRRSPSPPRRRRISR-SPVRRSRSPPRRQVSRSRSPPP 147
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +1
Query: 244 RKQRPTPEYKTKRSPTLENRRKNSPVSDNKKGRSPSVHDRRKRSP 378
R++R K RSP RR SP + RSP RR RSP
Sbjct: 93 RRRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSPV---RRSRSP 134
Score = 27.9 bits (59), Expect = 4.5
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Frame = +1
Query: 118 RRENTGS-----PQYRERKISPSLEHXXXXXXXXXXXXXXXXXXEYMRKQRPTPEYKTKR 282
RR N+GS P ++ ++ S S ++ P + + R
Sbjct: 27 RRTNSGSGDKDKPMWKSKRDS-SRSSRSRSRSSSESDSRSRSSSPVVKNSPPKRKREPIR 85
Query: 283 SPTLENRRKNSPVSDNKKGRSPSVHDRRKRSPSP 384
+P+ R+ S K+ RSP R +RSPSP
Sbjct: 86 APSASPPRRRRDDSPRKRSRSPP--RRTRRSPSP 117
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 30.3 bits (65), Expect = 0.85
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 244 RKQRPTPEYKTKRSPTLENRRKNSPVSDNKKGRSPSVHDRRKRSPSP 384
R++ +P Y RSP R SP S +++ + R RS SP
Sbjct: 120 RRRSRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRDNSRSRSRSP 166
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +1
Query: 238 YMRKQRPTPEYKTKRSPTLENRRKNSPVSDNKKGRSPSVHDRRKRSP 378
Y R + P RSP +RR + DN + RS S R SP
Sbjct: 128 YSRSRSPRRSRSRTRSPPSRDRRDSPDRRDNSRSRSRSPPPREDGSP 174
>U88178-4|AAC24411.1| 460|Caenorhabditis elegans Hypothetical
protein W09C3.2 protein.
Length = 460
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 262 PEYKTKRSPTLENRRKNSPVSDNKKGRSPSVHDRRKRSPSPGN 390
P+ +KR E+ K + N+ ++PSV D + P+P N
Sbjct: 255 PKSGSKRGSVRESTTKKQLLEKNESKKAPSVKDDKSSKPAPKN 297
>AF077541-1|AAL77189.1| 803|Caenorhabditis elegans Alpha-catulin
(catenin/vinculinrelated) protein 1, isoform a protein.
Length = 803
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 343 SFPFCYLKPDCFSSYFLR*GFFLSYTLELVSAYACIPKTRSFS 215
S PFC+ +P F +F FL +L +S +PK R +S
Sbjct: 760 SLPFCFSEPYIFFHFFSFFATFLPLSLSHLSMSYHLPKPREYS 802
>U55363-10|AAL11103.1| 364|Caenorhabditis elegans Hypothetical
protein ZC404.13 protein.
Length = 364
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 160 FYVLYTEVIQYF--LYGILIYLSLPSLFEGILIQILIPR 50
F+ ++T ++ YF +IY +L S F + +Q+ +PR
Sbjct: 301 FFSVFTNLLAYFNTTTSFIIYSTLSSKFRKLFVQLFVPR 339
>Z68319-2|CAA92700.2| 446|Caenorhabditis elegans Hypothetical
protein T23G7.2a protein.
Length = 446
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/41 (24%), Positives = 25/41 (60%)
Frame = -1
Query: 356 CTDGLLPFLLSETGLFFLLFSKVGLLFVLYSGVGLCLRMYS 234
C+DGL+ FL+ ++F+ ++ L ++L+ +C +++
Sbjct: 87 CSDGLIIFLVLGQAIYFMYYAPAFLQWLLFDLTSICAGIWT 127
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 247 KQRPTPEYKTKRSPTLENRRKNSPVSDNKKGRSPSVHDRRKRS 375
K P K P ENR K D ++ RS S DRR R+
Sbjct: 125 KAESRPLRKRISPPPSENREKEKQSRDKERRRSRSPRDRRGRA 167
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 244 RKQRPTPEYKTKRSPTLENRRKNSPVSDNKKGRSPSVHDRRKRSPS 381
R + P + +RSP+ + P K RS S RR+RSPS
Sbjct: 337 RSKSPPAPARRRRSPSAS--KSPPPAPKRAKSRSKSPPARRRRSPS 380
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 247 KQRPTPEYKTKRSPTLENRRKNSPVSDNKKGRSPSVH--DRRKRSPS 381
++R +P RSP RR+ SP + ++ +SP RR+RSPS
Sbjct: 465 RRRRSPSGSKSRSP----RRRRSPAAAPRRRQSPQRRRSPRRRRSPS 507
>Z75532-6|CAA99813.2| 330|Caenorhabditis elegans Hypothetical
protein C47E8.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = -2
Query: 148 YTEVIQYFLYGILIYLSLPSLFEGILIQILIPRNSYPTLTFCIFLQS 8
++ + Q+F+ G +IYL+ S+ E + + +Y + F I+L++
Sbjct: 88 FSGLFQFFVIGTMIYLTAYSVLEMFMFRFRASLFNYKSTYFYIYLKA 134
>Z75530-9|CAA99797.2| 330|Caenorhabditis elegans Hypothetical
protein C47E8.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = -2
Query: 148 YTEVIQYFLYGILIYLSLPSLFEGILIQILIPRNSYPTLTFCIFLQS 8
++ + Q+F+ G +IYL+ S+ E + + +Y + F I+L++
Sbjct: 88 FSGLFQFFVIGTMIYLTAYSVLEMFMFRFRASLFNYKSTYFYIYLKA 134
>Z54342-7|CAA91149.1| 460|Caenorhabditis elegans Hypothetical
protein C08H9.12 protein.
Length = 460
Score = 27.9 bits (59), Expect = 4.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 478 GIDSFFFWRKFPEMNFSFFYVREMDYS 398
G+D F+ W K+ + N ++RE+ Y+
Sbjct: 217 GVDIFWTWPKYSDENNYLMFIRELRYA 243
>AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical
protein Y57A10A.19 protein.
Length = 425
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 244 RKQRPTPEYKTKRSPTLENRRKNSPVSDNKKGRSPSVHDRRKR 372
R++R +PE +T R + E RR+ S ++ +SP D R+R
Sbjct: 295 RERRRSPEDRTVRRRSPERRRQQRSPSVERR-KSPQRRDERRR 336
Score = 27.1 bits (57), Expect = 7.9
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Frame = +1
Query: 82 QKEKVTKGKLKYRRENTGSPQYRERKISPSLEHXXXXXXXXXXXXXXXXXXEYMRKQRPT 261
+K+K K KLK + + +ER++ + + RK R
Sbjct: 213 RKKKEKKQKLKEMEKRREKLRQKERELLAVSDKVKKEEPAESSDEEDSRKDQ--RKPRED 270
Query: 262 PEYKTKRSPTLENRR--KNSPVSDNKKGRSPSVHDRRKRSP 378
+R E+RR + SP ++ RSP R+RSP
Sbjct: 271 RRRSVERQDQREDRRDRRRSPEDPRERRRSPEDRTVRRRSP 311
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 247 KQRPTPEYKTKRSPTLENRRKNSPVSDNKKG--RSPSVHDRRKRS 375
++RP + +RSP+ RR SP D K+ R P+ RR+RS
Sbjct: 343 QRRPEVKRSHQRSPSPRRRRSPSPKKDKKRDYRREPA---RRRRS 384
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 247 KQRPTPEYKTKRSPTLENRRKNSPVSDNKKG--RSPSVHDRRKRS 375
++RP + +RSP+ RR SP D K+ R P+ RR+RS
Sbjct: 343 QRRPEVKRSHQRSPSPRRRRSPSPKKDKKRDYRREPA---RRRRS 384
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 247 KQRPTPEYKTKRSPTLENRRKNSPVSDNKKG--RSPSVHDRRKRS 375
++RP + +RSP+ RR SP D K+ R P+ RR+RS
Sbjct: 274 QRRPEVKRSHQRSPSPRRRRSPSPKKDKKRDYRREPA---RRRRS 315
>Z68116-11|CAA92176.1| 317|Caenorhabditis elegans Hypothetical
protein F17A2.8 protein.
Length = 317
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 160 FYVLYTEVIQYFLYGILIYLSLPSLFEGILIQILI 56
+Y + E+ +Y + GI+ Y LPS GI+I L+
Sbjct: 161 YYRINLELDEYSVIGIVDYSVLPSRVNGIIINGLV 195
>Z68114-12|CAA92163.1| 317|Caenorhabditis elegans Hypothetical
protein F17A2.8 protein.
Length = 317
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 160 FYVLYTEVIQYFLYGILIYLSLPSLFEGILIQILI 56
+Y + E+ +Y + GI+ Y LPS GI+I L+
Sbjct: 161 YYRINLELDEYSVIGIVDYSVLPSRVNGIIINGLV 195
>U00031-1|AAZ82851.1| 330|Caenorhabditis elegans Hypothetical
protein B0361.4 protein.
Length = 330
Score = 27.1 bits (57), Expect = 7.9
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Frame = -2
Query: 328 YLKPDCFSSYFLR*GFFLSYTLELVSAYACIPKTRSFSFSSLEKGFF--FFYVLGKD*FY 155
YLKP S + +S + S + + F F+ F F YV K Y
Sbjct: 253 YLKPSIIVSNYFSLHKIISSIFAVNSFFFTEKRKAHFHFNFSSSSFHPGFVYVDLKSSIY 312
Query: 154 VLYTEVIQYFLYGILIY 104
Y +I YF Y I+
Sbjct: 313 SCYFSIIYYFYYFFSIF 329
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 247 KQRPTPEYKTKRSPTLENRRKNSPVSDNKKGRSPSVHDRRKRSPS 381
K+R + + KRS + E + +S + + RS RRKRS S
Sbjct: 553 KERKSSKKSKKRSKSREKEQSSSRHNHRSRSRSSERDRRRKRSRS 597
>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
protein Y46G5A.6 protein.
Length = 1002
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 235 EYMRKQRPTPEYKT-KRSPTLENRRKNSPVSDNKKGRSPSVHDRRKRS 375
E R + +PE +T +RSP++E RRK+ D ++ R S+ + R+ S
Sbjct: 652 EDCRDRLRSPEDRTERRSPSVE-RRKSPLRRDERRRRHDSLENERRSS 698
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.304 0.124 0.344
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,902,827
Number of Sequences: 27780
Number of extensions: 194104
Number of successful extensions: 520
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
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