Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L18
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-1|CAB04334.1|  329|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U80839-3|AAB37909.1|  344|Caenorhabditis elegans Serpentine rece...    27   9.2  

>Z81533-1|CAB04334.1|  329|Caenorhabditis elegans Hypothetical
           protein F36G9.2 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 7/37 (18%), Positives = 22/37 (59%)
 Frame = +1

Query: 31  TFMNLKRVLKNKYRVICTDARGFWLTLMRRKVIINYN 141
           T +++  + + ++ ++C    GFW T  +  ++++Y+
Sbjct: 110 TSVSILSMFEYRFNILCVKTGGFWSTARKPWLVVHYS 146


>U80839-3|AAB37909.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein72 protein.
          Length = 344

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 52  VLKNKYRVICTDARGFWL 105
           +LKN++R+  +  RG+WL
Sbjct: 139 ILKNRFRISSSRGRGYWL 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,341,408
Number of Sequences: 27780
Number of extensions: 167726
Number of successful extensions: 248
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)