Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_L18
(476 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 25 0.32
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 25 0.32
AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precur... 22 3.9
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 21 6.8
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 21 6.8
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.0
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.0
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.0
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.0
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.0
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.0
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.0
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.0
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 21 9.0
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 25.4 bits (53), Expect = 0.32
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = -1
Query: 260 PMATKYFSCVQCLFSNKLCIQIYVVKV**INPQMH--LSYXXXXXXITFLRIKVSQNPRA 87
P+ KY L S +C+ + V+ V +PQ H + R+ V + P+
Sbjct: 305 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIHILPRLLVMRRPQY 364
Query: 86 SVQITRY 66
+ RY
Sbjct: 365 KFETNRY 371
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 25.4 bits (53), Expect = 0.32
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = -1
Query: 260 PMATKYFSCVQCLFSNKLCIQIYVVKV**INPQMH--LSYXXXXXXITFLRIKVSQNPRA 87
P+ KY L S +C+ + V+ V +PQ H + R+ V + P+
Sbjct: 305 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIHILPRLLVMRRPQY 364
Query: 86 SVQITRY 66
+ RY
Sbjct: 365 KFETNRY 371
>AY127579-1|AAN02286.1| 405|Apis mellifera venom protease
precursor protein.
Length = 405
Score = 21.8 bits (44), Expect = 3.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 10 LFTNNLKTFMNLKRVLKNK 66
+FTNN+ F N+ V K K
Sbjct: 2 IFTNNIAAFQNVVLVKKVK 20
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 21.0 bits (42), Expect = 6.8
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -1
Query: 272 DCV*PMATKYFSCVQCLFS 216
DC +T F+C+Q +F+
Sbjct: 190 DCTIEYSTGNFTCIQIVFN 208
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 21.0 bits (42), Expect = 6.8
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = +3
Query: 318 IICFQKLFILIPHTDTNSTRI 380
I+C L +PH TN I
Sbjct: 295 ILCMSDLHWQLPHNSTNPPNI 315
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.0
Identities = 5/25 (20%), Positives = 15/25 (60%)
Frame = -1
Query: 260 PMATKYFSCVQCLFSNKLCIQIYVV 186
P+ YF+C+ + ++ + + + V+
Sbjct: 255 PLLGSYFNCIMFMVASSVVLTVLVL 279
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.0
Identities = 5/25 (20%), Positives = 15/25 (60%)
Frame = -1
Query: 260 PMATKYFSCVQCLFSNKLCIQIYVV 186
P+ YF+C+ + ++ + + + V+
Sbjct: 255 PLLGSYFNCIMFMVASSVVLTVLVL 279
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.0
Identities = 5/25 (20%), Positives = 15/25 (60%)
Frame = -1
Query: 260 PMATKYFSCVQCLFSNKLCIQIYVV 186
P+ YF+C+ + ++ + + + V+
Sbjct: 255 PLLGSYFNCIMFMVASSVVLTVLVL 279
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.0
Identities = 5/25 (20%), Positives = 15/25 (60%)
Frame = -1
Query: 260 PMATKYFSCVQCLFSNKLCIQIYVV 186
P+ YF+C+ + ++ + + + V+
Sbjct: 255 PLIGSYFNCIMFMVASSVVLTVLVL 279
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.0
Identities = 5/25 (20%), Positives = 15/25 (60%)
Frame = -1
Query: 260 PMATKYFSCVQCLFSNKLCIQIYVV 186
P+ YF+C+ + ++ + + + V+
Sbjct: 255 PLIGSYFNCIMFMVASSVVLTVLVL 279
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.0
Identities = 5/25 (20%), Positives = 15/25 (60%)
Frame = -1
Query: 260 PMATKYFSCVQCLFSNKLCIQIYVV 186
P+ YF+C+ + ++ + + + V+
Sbjct: 255 PLIGSYFNCIMFMVASSVVLTVLVL 279
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 9.0
Identities = 5/25 (20%), Positives = 15/25 (60%)
Frame = -1
Query: 260 PMATKYFSCVQCLFSNKLCIQIYVV 186
P+ YF+C+ + ++ + + + V+
Sbjct: 323 PLLGSYFNCIMFMVASSVVLTVLVL 347
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 9.0
Identities = 5/25 (20%), Positives = 15/25 (60%)
Frame = -1
Query: 260 PMATKYFSCVQCLFSNKLCIQIYVV 186
P+ YF+C+ + ++ + + + V+
Sbjct: 323 PLIGSYFNCIMFMVASSVVLTVLVL 347
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 20.6 bits (41), Expect = 9.0
Identities = 9/36 (25%), Positives = 18/36 (50%)
Frame = -1
Query: 260 PMATKYFSCVQCLFSNKLCIQIYVVKV**INPQMHL 153
P+ K+ L + +C+ + V+ V +PQ H+
Sbjct: 301 PLLGKFVLFTMILDTFSICVTVVVLNVHFRSPQTHV 336
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,869
Number of Sequences: 438
Number of extensions: 2298
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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