Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L17
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0522 + 3779404-3779439,3779594-3779709,3780120-3780327,378...    30   1.4  
06_01_0030 - 296681-296789,296903-297105,297348-297426,297512-29...    28   7.2  
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070...    27   9.6  

>02_01_0522 +
           3779404-3779439,3779594-3779709,3780120-3780327,
           3781446-3781611,3781713-3781842,3782496-3782619,
           3782794-3782844,3783140-3783262,3783504-3783602,
           3783680-3783790,3783868-3783957,3784035-3784175,
           3787913-3788116,3788154-3788290,3788429-3788662,
           3789535-3789829,3789963-3790017,3790144-3790245,
           3790581-3790669,3790807-3790899
          Length = 867

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 112 NIGIITNLNYRQNEIGFSAETKIEPS*TCTIL 17
           N+ I T L  R N+ GF A+  IEP  T T+L
Sbjct: 3   NMNITTILEKRLNKEGFKADQDIEPKLTTTVL 34


>06_01_0030 -
           296681-296789,296903-297105,297348-297426,297512-297877,
           298590-298956,299235-299373,299461-299731,299849-299958,
           300567-300704
          Length = 593

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 133 TYMFSVMNIGIITNLNYR 80
           TY F V N+GI T+LN+R
Sbjct: 222 TYRFRVHNVGISTSLNFR 239


>02_05_0877 +
           32403363-32404662,32406545-32406630,32406709-32407077,
           32407174-32407257,32407362-32407784,32408368-32408434,
           32409238-32409430,32409577-32409680,32409787-32409990,
           32410174-32410427,32410511-32410735,32410812-32411033,
           32411109-32411162,32411337-32411402,32411496-32411633,
           32411979-32412032,32412334-32412393,32412975-32413340,
           32413415-32413582
          Length = 1478

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 236 CNQCVPTSHFRAYSPSITPKINYLCNCNLCRQSQSL 343
           CN+C  T H + Y   + P   +L  C  C+  +SL
Sbjct: 304 CNRCKVTVHQKCYGLHVVPDGQWL--CTWCKDLESL 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,779,818
Number of Sequences: 37544
Number of extensions: 232748
Number of successful extensions: 334
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)