Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L17
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    30   1.6  
U00035-2|AAA50644.2|  413|Caenorhabditis elegans Hypothetical pr...    29   2.1  

>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
           see also lmb-protein 2 protein.
          Length = 1535

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 236 CNQCVPTSHFRAYSPSITPKINYLCNCNLCRQSQSLFFSQQKY 364
           CN+C+P  + R +    + + N    CN  + S   +F QQ +
Sbjct: 306 CNECLPFYNDRPWRSGTSVEANECIACNCSQLSNRCYFDQQLF 348


>U00035-2|AAA50644.2|  413|Caenorhabditis elegans Hypothetical
           protein R01H2.2 protein.
          Length = 413

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -1

Query: 142 IRITYMFSVMNIGIITNLNYRQNEI 68
           + +TY+F ++NIG++  LN+   E+
Sbjct: 4   LSLTYIFVIINIGLVVGLNFTDAEV 28


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,244,526
Number of Sequences: 27780
Number of extensions: 250027
Number of successful extensions: 537
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)