Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L15
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   268   3e-74
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   3.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   3.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   6.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   6.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.6  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  268 bits (657), Expect = 3e-74
 Identities = 134/148 (90%), Positives = 142/148 (95%)
 Frame = +2

Query: 122 ENPIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGII 301
           ++PIY PFFGVMGAASAIIFS+LGAAYGTAKSGTGIAAM+VMRPE IMKSIIPVVMAGII
Sbjct: 5   DHPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 64

Query: 302 AIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 481
           AIYGLVVAVLIAG L++P   YTL+KGF+HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA
Sbjct: 65  AIYGLVVAVLIAGGLEEP-KGYTLFKGFVHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 123

Query: 482 QQPRLFVGMILILIFAEVLGLYGLIVAI 565
           QQPRLFVGMILILIFAEVLGLYGLIVAI
Sbjct: 124 QQPRLFVGMILILIFAEVLGLYGLIVAI 151


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 42  VSWSECVQIVIRVFGTCKYSHIQ 110
           +SW E +QI + V    +Y H Q
Sbjct: 694 LSWLERIQIALDVLEGIRYLHSQ 716


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 42  VSWSECVQIVIRVFGTCKYSHIQ 110
           +SW E +QI + V    +Y H Q
Sbjct: 732 LSWLERIQIALDVLEGIRYLHSQ 754


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = -1

Query: 549 PYRPNTSAKMRIRIIPTNNLGCWAVPRTPASPTMPMAKPAARPEKPTARP 400
           P   N+ A  RI I+P   + C  VP+   S  +   +      +P   P
Sbjct: 774 PQNTNSQAIPRIPILPMIPVYCVPVPQVNDSTILSPVREKLSSSQPMQPP 823


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 250 PHHRHGGNT 224
           PHH+HG +T
Sbjct: 334 PHHQHGNHT 342


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 284 VMAGIIAIYGLVVAVLIAGSLDQ 352
           +++G+I   GL++ VLI GS+ +
Sbjct: 413 IVSGLIT--GLIMRVLICGSISE 433


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 214 LGCAICSTKGAEDDGRRRPHNS 149
           L C + +T+GA+D   R P ++
Sbjct: 308 LHCNMENTEGADDASERNPRSA 329


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 334 NQDSYDQSVDGNDTRHDNGN 275
           NQ++ +Q+ D  +    NGN
Sbjct: 439 NQNANNQNADNQNANKQNGN 458


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,707
Number of Sequences: 438
Number of extensions: 5010
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)