Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L14
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230...    29   1.9  
12_01_0212 - 1605544-1605647,1605799-1605842,1606189-1606230,160...    27   4.3  
02_04_0292 + 21642544-21642726                                         27   4.3  
01_06_1807 - 40021733-40021987                                         27   5.7  
11_01_0747 + 6296323-6296505                                           27   7.6  
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353...    27   7.6  

>11_06_0495 -
           24319531-24320831,24320923-24321109,24322919-24323062,
           24324467-24324469
          Length = 544

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 267 LHPTHTIRRYMSSVMDLEIHYFEQISNL 184
           + PT T+RR M++V  L +H+F+Q S +
Sbjct: 331 VRPTPTVRRIMTNV--LSLHFFQQASGI 356


>12_01_0212 -
           1605544-1605647,1605799-1605842,1606189-1606230,
           1606306-1606394,1606477-1606521,1606801-1606845,
           1606874-1606981,1607065-1607150,1607553-1607640,
           1608185-1608385,1608790-1608865,1608951-1609000,
           1609082-1609144,1609225-1609278,1609395-1609497,
           1610010-1610050,1610654-1610685,1612086-1612224
          Length = 469

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 19  CPKWI*YNTLYLGNFVYWL 75
           C  W+ +NTL+  +F YW+
Sbjct: 68  CTSWVIFNTLFGLSFTYWM 86


>02_04_0292 + 21642544-21642726
          Length = 60

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 261 PTHTIRRYMSSVMDLEIHYFEQ 196
           P  T+RRY S++ DL  H FE+
Sbjct: 18  PPDTVRRYESAISDLAGHGFEE 39


>01_06_1807 - 40021733-40021987
          Length = 84

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 252 TIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTL 148
           T+RRY S++ DL  H FE+   L    +  +Q+ +
Sbjct: 45  TVRRYESAISDLAGHGFEEEGYLVINYKSDLQTVM 79


>11_01_0747 + 6296323-6296505
          Length = 60

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 252 TIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTL 148
           TIRRY S V DL  H FE+ +    G +  +Q+ +
Sbjct: 21  TIRRYESVVSDLAGHGFEEGAYPVVGYESDLQTAM 55


>10_01_0323 +
           3530246-3530446,3531091-3531726,3531860-3532018,
           3532276-3532569,3557747-3557941,3558875-3559095,
           3559190-3559373,3559797-3559973,3561319-3561824,
           3561880-3562060
          Length = 917

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +3

Query: 96  KLKVLLYTRIVYLGIFSVTCFALSAAGRDINSKFAQNNESQG 221
           ++ V + T I+YL +  +   +  A G D+ + F+  N+++G
Sbjct: 556 RMSVFITTLIIYLCVKLMEIDSYVAYGNDVVNSFSTGNQTEG 597


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,910,887
Number of Sequences: 37544
Number of extensions: 168537
Number of successful extensions: 279
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)