Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_L13
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 87 2e-18
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 45 7e-06
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 31 0.12
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 29 0.50
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 27 1.5
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 27 2.7
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 26 3.5
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 26 4.7
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi... 25 6.2
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 25 8.2
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 87.0 bits (206), Expect = 2e-18
Identities = 37/80 (46%), Positives = 54/80 (67%)
Frame = +1
Query: 349 DTLTLTRLLKARMQMYEHDHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDADGKG 528
D L L + ++ R+ +Y +H + M+ + A M+ T+LY KRFFPYYV +AG+D +GKG
Sbjct: 64 DALALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKG 123
Query: 529 CVYSYDPIGHCERSNYRAGG 588
+YS+DP+G ER RAGG
Sbjct: 124 EIYSFDPVGSYEREWCRAGG 143
Score = 53.6 bits (123), Expect = 2e-08
Identities = 22/50 (44%), Positives = 34/50 (68%)
Frame = +3
Query: 159 QVRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFRLSE 308
Q +F+PY NGG+ VAIAGD +A++ DTR G++I TR Q ++ + +
Sbjct: 3 QSQFDPYVQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGD 52
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 45.2 bits (102), Expect = 7e-06
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = +1
Query: 349 DTLTLTRLLKARMQMYEHDHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDADGKG 528
D TL L + ++ +Y+ + + A ++S+ LY KRF PY+ V+AG+ D
Sbjct: 59 DVQTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTP 118
Query: 529 CVYSYDPIG 555
+ +D IG
Sbjct: 119 FICGFDSIG 127
Score = 33.1 bits (72), Expect = 0.031
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 186 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFRLSERT 314
NGGS VA+AG + I +D RL T + K+F + ++T
Sbjct: 7 NGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKT 49
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 31.1 bits (67), Expect = 0.12
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 189 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFRLS 305
G +IV + D V+GADTR + G I ++ KKL +S
Sbjct: 35 GTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLIS 73
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 29.1 bits (62), Expect = 0.50
Identities = 22/80 (27%), Positives = 30/80 (37%)
Frame = +1
Query: 349 DTLTLTRLLKARMQMYEHDHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDADGKG 528
DT T+ LLK + MY + A + S M Y + ++AG D G
Sbjct: 75 DTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNM-LSAGLIVAGYDEKTGG 133
Query: 529 CVYSYDPIGHCERSNYRAGG 588
VYS G + GG
Sbjct: 134 DVYSIPLGGSLHKQPLAIGG 153
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 114 SVNENFPEYAVPGAKQVRFEPYADNGGSIVAIAGD-DYAVIGADT 245
S N F P K ++ +GG+ AIA D YA +G+DT
Sbjct: 118 SENNLFGRTVNPVVKDSNYDVGGSSGGAAAAIAADICYASVGSDT 162
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 472 FFPYYVSNVLAGLDADGKGCVYSYDPIGHCERSNY 576
FFP Y S AG+ A G+ ++SYDP C NY
Sbjct: 238 FFPNYTS--AAGVFAIGE--MFSYDPNVSCSVRNY 268
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 204 AIAGDDYAVIGADTRLSTGFSI 269
AI GD Y+ IG++ GFSI
Sbjct: 321 AIVGDTYSTIGSNVEALPGFSI 342
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 538 CTHILCHLHLSQLRH*IRSKERNVCST 458
C H +CH+ +LR ++KE C T
Sbjct: 96 CNHRMCHVCALRLRALYKTKECTFCKT 122
>SPBC18E5.05c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 25.4 bits (53), Expect = 6.2
Identities = 20/82 (24%), Positives = 35/82 (42%)
Frame = +1
Query: 157 SRFALNRTQTTVAALLQSLAMTMQSLVPILALARASLSTRGIRRSCLDYQNAXVLRXATC 336
S+F LNR ++ L Q+ PIL + ++RGI+ + Y+
Sbjct: 2 SKFLLNRCIRDLSPLTVLKDNLQQTAKPILNYYAKNAASRGIKVLFISYETLEKEAPEGI 61
Query: 337 ACWCDTLTLTRLLKARMQMYEH 402
C+ T +K+ ++YEH
Sbjct: 62 DCFL-YATSWEKVKSLKELYEH 82
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 8.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 263 LYLHEGSEEVV*IIRTHXYFXVRRVLAGVTRLRLPVY 373
L HEG EV + ++ +R +G+T L LPVY
Sbjct: 70 LPFHEGIPEVA---KGFRWWLLRAFASGLTNLALPVY 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,302,965
Number of Sequences: 5004
Number of extensions: 43887
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -