Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_L13
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0656 + 19267392-19267432,19267530-19267637,19269114-192691... 105 2e-23
08_02_1353 + 26335306-26335448,26336025-26336106,26336322-263364... 88 4e-18
06_03_0903 - 25816395-25816493,25816695-25816779,25817390-258174... 47 1e-05
02_01_0614 - 4599035-4599083,4599209-4599303,4599410-4599494,460... 46 2e-05
03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871 35 0.042
02_04_0641 - 24667637-24667753,24670088-24670324 31 0.90
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 30 1.2
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 30 1.2
10_06_0045 - 10048056-10048469 28 6.3
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 28 6.3
12_02_1060 - 25752181-25754229 27 8.4
07_03_1280 + 25434933-25436153 27 8.4
07_01_0714 - 5451246-5451408,5453401-5453534,5453608-5453796,545... 27 8.4
06_01_0493 - 3536207-3537056,3537603-3537826,3538234-3538503,353... 27 8.4
>09_04_0656 +
19267392-19267432,19267530-19267637,19269114-19269195,
19269637-19269766,19269882-19270024,19270198-19270284,
19270384-19270458
Length = 221
Score = 105 bits (253), Expect = 2e-23
Identities = 46/80 (57%), Positives = 58/80 (72%)
Frame = +1
Query: 349 DTLTLTRLLKARMQMYEHDHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDADGKG 528
D L + L AR +Y+H HNK M+ PA+AQ+LS LYYKRFFPYY NVL GLD++GKG
Sbjct: 64 DIKALHKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKG 123
Query: 529 CVYSYDPIGHCERSNYRAGG 588
CV++YD +G ER+ Y A G
Sbjct: 124 CVFTYDAVGSYERTGYSAQG 143
Score = 58.8 bits (136), Expect = 3e-09
Identities = 25/45 (55%), Positives = 34/45 (75%)
Frame = +3
Query: 177 YADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFRLSER 311
Y +NGG+ VAIAG DY V+ ADTRLS G++I TRD K+ L+++
Sbjct: 9 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADK 53
>08_02_1353 +
26335306-26335448,26336025-26336106,26336322-26336451,
26336486-26336548,26336549-26336691,26336827-26336913,
26337014-26337088
Length = 240
Score = 88.2 bits (209), Expect = 4e-18
Identities = 47/101 (46%), Positives = 59/101 (58%), Gaps = 21/101 (20%)
Frame = +1
Query: 349 DTLTLTRLLKARMQMYEHDHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDAD--- 519
D L R L A+ +YEH+HNK M+ PA+AQ+LS LYYKRFFPYY NVL GLD++
Sbjct: 62 DVKALQRNLTAKELLYEHNHNKKMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEVAA 121
Query: 520 ------------------GKGCVYSYDPIGHCERSNYRAGG 588
GKGCV++YD +G ER+ Y A G
Sbjct: 122 HQYERMITTCENIFSSFAGKGCVFTYDAVGSYERTGYSAQG 162
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/49 (55%), Positives = 37/49 (75%)
Frame = +3
Query: 165 RFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFRLSER 311
RFE Y +NGG+ VA+AG DY V+ ADTRLS G+SI +RD K+ L+++
Sbjct: 3 RFEVYENNGGTCVAVAGADYCVVAADTRLSVGYSILSRDSSKIAHLADK 51
>06_03_0903 -
25816395-25816493,25816695-25816779,25817390-25817479,
25818566-25818673,25818771-25818952,25819032-25819216,
25820812-25820971
Length = 302
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/69 (34%), Positives = 37/69 (53%)
Frame = +1
Query: 349 DTLTLTRLLKARMQMYEHDHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDADGKG 528
D TL + L R ++Y+ + M A ++S +LY KRF PY+ V+AGL D +
Sbjct: 172 DAQTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEP 231
Query: 529 CVYSYDPIG 555
+ + D IG
Sbjct: 232 FICTMDCIG 240
>02_01_0614 -
4599035-4599083,4599209-4599303,4599410-4599494,
4600107-4600196,4600772-4600879,4600983-4601197
Length = 213
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/69 (34%), Positives = 38/69 (55%)
Frame = +1
Query: 349 DTLTLTRLLKARMQMYEHDHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDADGKG 528
D TL + L R ++Y+ + M A A ++S +LY KRF PY+ V+AGL + +
Sbjct: 68 DAQTLYQRLVFRHKLYQLREERDMKPQAFASLVSALLYEKRFGPYFCQPVIAGLGDNDEP 127
Query: 529 CVYSYDPIG 555
+ + D IG
Sbjct: 128 FICTMDCIG 136
>03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871
Length = 212
Score = 35.1 bits (77), Expect = 0.042
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 349 DTLTLTRLLKARMQMYEHDHNKSMTTPAVAQMLSTMLYYK-RFFPYYVSNVLAGLDADGK 525
D + T ++ + +Y+ +N ++T A A L R PYYV+ +LAG D+D
Sbjct: 52 DRVQFTEFIQKNLHLYQFRNNIPLSTAATANFTRGELATALRKNPYYVNVLLAGYDSDVG 111
Query: 526 GCVYSYDPI 552
+Y D I
Sbjct: 112 ASLYYIDYI 120
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 198 IVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFRL 302
++ + G D+AV+ ADT ++ D+ K+ L
Sbjct: 4 VIGVVGRDFAVVAADTSAVQSILVHKTDEDKVMVL 38
>02_04_0641 - 24667637-24667753,24670088-24670324
Length = 117
Score = 30.7 bits (66), Expect = 0.90
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 126 NFPEYAVPGAKQVRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGF 263
N P A+PGA +R + +G I+GD YA +G D+ GF
Sbjct: 56 NTPAAALPGAGPLR---RSKSGTKSAKISGDIYADLGVDSEFEIGF 98
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 189 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFRLSE 308
G +IV + D V+ AD+R STG + R K+ +L++
Sbjct: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTD 64
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 189 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFRLSE 308
G +IV + D V+ AD+R STG + R K+ +L++
Sbjct: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTD 64
>10_06_0045 - 10048056-10048469
Length = 137
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 254 AKASIGTNDCIVIASDCN--NAATVVCVRFKANLLG 153
AK GT+DC + S +AA +C KAN+LG
Sbjct: 76 AKIGHGTDDCCSLLSGIADLDAAVCLCTAVKANVLG 111
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +3
Query: 123 ENFPEYAVPGAKQVRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKL 293
+N A+ K ++ + G +IV + D V+GADTR + G + ++ +K+
Sbjct: 16 DNCARNAMLVEKGLKMPGFLKTGTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKI 72
>12_02_1060 - 25752181-25754229
Length = 682
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -1
Query: 256 VLRRVSAPMTA*SSPAIATMLPPLSAYGSKRTCLAPGTAYSGKFSL 119
VLR + P + + +AT LPP+ A+G + + + SG +
Sbjct: 627 VLRGEAPPPSLPARMPVATFLPPIDAFGYTSSAVTGSSTSSGNIGV 672
>07_03_1280 + 25434933-25436153
Length = 406
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 484 SKERNVCSTTLWRASARPQELSSTCCDHVHTFASSLSING*A*ACHTSK 338
SK +V +T + R+++R + TC D A LS +G AC S+
Sbjct: 225 SKSGDVMATNMQRSASRQYSSAVTCGDGGEAVAYFLSNSGAVVACELSR 273
>07_01_0714 -
5451246-5451408,5453401-5453534,5453608-5453796,
5454313-5454825,5455815-5456856,5457283-5457380,
5458224-5458451
Length = 788
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 142 RFPAPSRFALNRTQTTVAALLQSLAMTMQSLVPILALARASLSTRGI 282
R + ++ T T +AAL ++++ Q L LA A STRGI
Sbjct: 202 RLASDAKLKQTLTATEIAALRRAVSDNRQKLADQLAEAACQSSTRGI 248
>06_01_0493 -
3536207-3537056,3537603-3537826,3538234-3538503,
3539042-3539146
Length = 482
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 376 KARMQM-YEHDHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDADGKGCVYSYD 546
KAR + Y+ H K+ + ++ T YYKR + S + G G C Y ++
Sbjct: 125 KARAGIDYDSSHGKARPNDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYRHE 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,289,110
Number of Sequences: 37544
Number of extensions: 297536
Number of successful extensions: 817
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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