Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_L13
(589 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 91 7e-19
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 91 7e-19
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 43 2e-04
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical... 29 2.4
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ... 29 2.4
Z82260-11|CAB05139.1| 359|Caenorhabditis elegans Hypothetical p... 29 3.2
AF016449-15|AAG24002.1| 496|Caenorhabditis elegans Cytochrome p... 29 3.2
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z73911-8|CAL64005.1| 367|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z73911-7|CAA98142.2| 483|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z71177-1|CAA94865.3| 355|Caenorhabditis elegans Hypothetical pr... 28 5.7
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 90.6 bits (215), Expect = 7e-19
Identities = 40/86 (46%), Positives = 54/86 (62%)
Frame = +1
Query: 331 TCACWCDTLTLTRLLKARMQMYEHDHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGL 510
T + D L L ++L++R+ Y D+ M+ A++LS LYY+RFFPYY +LAG+
Sbjct: 97 TSGFYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGI 156
Query: 511 DADGKGCVYSYDPIGHCERSNYRAGG 588
D GKG V+SYDPIG ER Y A G
Sbjct: 157 DEHGKGAVFSYDPIGCIERLGYSASG 182
Score = 44.0 bits (99), Expect = 8e-05
Identities = 19/49 (38%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Frame = +3
Query: 165 RFEPYADNGGSIVAIAGDDYAVIGADTRLS-TGFSIYTRDQKKLFRLSE 308
R+ PY+ GGS AI+G+++A++ +DTR++ +I TRD +K+ L++
Sbjct: 43 RWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILND 91
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 90.6 bits (215), Expect = 7e-19
Identities = 40/86 (46%), Positives = 54/86 (62%)
Frame = +1
Query: 331 TCACWCDTLTLTRLLKARMQMYEHDHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGL 510
T + D L L ++L++R+ Y D+ M+ A++LS LYY+RFFPYY +LAG+
Sbjct: 97 TSGFYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGI 156
Query: 511 DADGKGCVYSYDPIGHCERSNYRAGG 588
D GKG V+SYDPIG ER Y A G
Sbjct: 157 DEHGKGAVFSYDPIGCIERLGYSASG 182
Score = 44.0 bits (99), Expect = 8e-05
Identities = 19/49 (38%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Frame = +3
Query: 165 RFEPYADNGGSIVAIAGDDYAVIGADTRLS-TGFSIYTRDQKKLFRLSE 308
R+ PY+ GGS AI+G+++A++ +DTR++ +I TRD +K+ L++
Sbjct: 43 RWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILND 91
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +1
Query: 349 DTLTLTRLLKARMQMYEHDHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDADGKG 528
D T+ + R +YE N+++ +++M+S + Y RF Y+ ++AGLD K
Sbjct: 59 DARTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKP 118
Query: 529 CVYSYDPIG 555
+ D IG
Sbjct: 119 YICCMDTIG 127
Score = 36.7 bits (81), Expect = 0.012
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +3
Query: 189 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFRLSER 311
GG++VA+AGD+ I +D R+ + DQKK+ +++++
Sbjct: 8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDK 48
>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
protein Y18D10A.13 protein.
Length = 2417
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 373 LKARMQMYEHDHNKSMTTPAVAQMLSTML 459
LKA + HD +K P + QMLSTML
Sbjct: 892 LKAAAAEWFHDCSKHQDLPRIVQMLSTML 920
>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
protein protein.
Length = 2417
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 373 LKARMQMYEHDHNKSMTTPAVAQMLSTML 459
LKA + HD +K P + QMLSTML
Sbjct: 892 LKAAAAEWFHDCSKHQDLPRIVQMLSTML 920
>Z82260-11|CAB05139.1| 359|Caenorhabditis elegans Hypothetical
protein C32H11.13 protein.
Length = 359
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 441 DALHNVVLQTFLSLLRI*CLSWLR 512
D +HN++LQTFL LR L+W R
Sbjct: 10 DKIHNLLLQTFLHYLRF-ILNWWR 32
>AF016449-15|AAG24002.1| 496|Caenorhabditis elegans Cytochrome p450
family protein 33C9 protein.
Length = 496
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 262 SLSTRGIRRSCLDYQNAXVLRXATCACWCDTLTLTRLLKARMQMYE 399
S ST+ + CLD A ++ + WC TL L A+ +++E
Sbjct: 285 SFSTKQLSNMCLDLWFAALMTTSNTMTWCFAYTL-NYLDAQQKLHE 329
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 189 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFRLSE 308
G +IVA+A V+GAD+R + G I + +K+ +L+E
Sbjct: 46 GTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHKLTE 85
>Z73911-8|CAL64005.1| 367|Caenorhabditis elegans Hypothetical
protein T12A7.2b protein.
Length = 367
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +3
Query: 105 NMLSVNENFPEYAVPGAKQVRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTR 278
N + VN+ EYA+ G QV ++ N SI G D G T + G + TR
Sbjct: 39 NGMIVNDAHTEYAMKGQAQVDWQEIYKNHASIEDNLGFDPCRHGGVTNETDGSCVCTR 96
>Z73911-7|CAA98142.2| 483|Caenorhabditis elegans Hypothetical
protein T12A7.2a protein.
Length = 483
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +3
Query: 105 NMLSVNENFPEYAVPGAKQVRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTR 278
N + VN+ EYA+ G QV ++ N SI G D G T + G + TR
Sbjct: 39 NGMIVNDAHTEYAMKGQAQVDWQEIYKNHASIEDNLGFDPCRHGGVTNETDGSCVCTR 96
>Z71177-1|CAA94865.3| 355|Caenorhabditis elegans Hypothetical
protein AC3.1 protein.
Length = 355
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = -2
Query: 582 GAIIRAFTVSNWIITVHTSFAICI*AS*DIRYVVRKETFVVQHCGEHLRDRRSCHRLVVI 403
G + + F + + T +T+F IC+ AS VRK + + ++L D + +VI
Sbjct: 93 GLLTQIFRIDDSFQTTYTAFTICLVASALNSCFVRKHQAISKISSKYLLD--NVTYCIVI 150
Query: 402 MFIHLHP 382
++++P
Sbjct: 151 FLLNIYP 157
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,124,286
Number of Sequences: 27780
Number of extensions: 260128
Number of successful extensions: 617
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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