Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L11
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...   155   2e-39
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...   155   2e-39
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...   155   2e-39
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...    63   1e-11
SPAC8F11.02c |||diphthamide biosynthesis protein Dph3 |Schizosac...    25   3.6  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   4.8  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   4.8  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    24   8.3  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    24   8.3  

>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score =  155 bits (376), Expect = 2e-39
 Identities = 75/80 (93%), Positives = 78/80 (97%)
 Frame = +1

Query: 121 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 300
           MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 301 LLIRKLAFQRLVREIAPDFK 360
           LLIRKL FQRLVREIA DFK
Sbjct: 61  LLIRKLPFQRLVREIAQDFK 80


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score =  155 bits (376), Expect = 2e-39
 Identities = 75/80 (93%), Positives = 78/80 (97%)
 Frame = +1

Query: 121 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 300
           MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 301 LLIRKLAFQRLVREIAPDFK 360
           LLIRKL FQRLVREIA DFK
Sbjct: 61  LLIRKLPFQRLVREIAQDFK 80


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score =  155 bits (376), Expect = 2e-39
 Identities = 75/80 (93%), Positives = 78/80 (97%)
 Frame = +1

Query: 121 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 300
           MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 301 LLIRKLAFQRLVREIAPDFK 360
           LLIRKL FQRLVREIA DFK
Sbjct: 61  LLIRKLPFQRLVREIAQDFK 80


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score = 63.3 bits (147), Expect = 1e-11
 Identities = 32/58 (55%), Positives = 44/58 (75%), Gaps = 4/58 (6%)
 Frame = +1

Query: 196 ARKSAPSTGG--VKKPH--RYRPGTVALREIRRYQKSTELLIRKLAFQRLVREIAPDF 357
           A+KS  +  G  + +P   RYRPGT ALREIR+YQ+ST+LLI++L F R+VREI+ +F
Sbjct: 2   AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEF 59


>SPAC8F11.02c |||diphthamide biosynthesis protein Dph3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 79

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 346 QFLERVAGKPACGSTTP*IFDSDEFLE 266
           Q  E VA  P+C      I+D DEF+E
Sbjct: 39  QLGEDVARCPSCSLIVRVIYDEDEFME 65


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 208 APSTGGVKKPHRYRPGTVALREIRRY 285
           APS  G K P    P T+ + EIRR+
Sbjct: 25  APSGLGWKSPSLAEPFTLPISEIRRF 50


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 351 WSNFSNESLESQLAD 307
           WSNFS+ + ES LAD
Sbjct: 569 WSNFSHFNAESALAD 583


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +2

Query: 2   HDGHLEHMIIVFVVVEFVYKSNFSTIL 82
           ++ ++ H  + F   E +++ NF T+L
Sbjct: 436 YEQYINHSAVAFSFTEEIFEKNFVTVL 462


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 130 TKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPH 240
           T      STG  +    L   A++KS PS     KP+
Sbjct: 282 TSSLTSNSTGKTSKTTDLLIAASKKSLPSNSTPSKPN 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,445,791
Number of Sequences: 5004
Number of extensions: 26507
Number of successful extensions: 69
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)