Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_L09
(471 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 69 3e-13
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 45 7e-06
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 31 0.067
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 27 1.1
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 27 1.1
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 26 2.5
SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 4.4
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 25 7.7
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 69.3 bits (162), Expect = 3e-13
Identities = 36/80 (45%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Frame = +2
Query: 26 VFYGSQTGTAEEFAGRLAKEG-IRYRMKRMVADPEECDMEELTKLQEISNSLAVFCMATY 202
VF+GSQTGTAE+FA R + E + + MV D E D+ +L + L VF +ATY
Sbjct: 55 VFFGSQTGTAEDFAYRFSTEAKANFNLTNMVFDLENYDLTDLDNFDR--SKLLVFFLATY 112
Query: 203 GEGDPTDNSMEFYEWLKNGD 262
GEG+PTDN+ F + L+ D
Sbjct: 113 GEGEPTDNAEAFLQLLEGDD 132
Score = 64.5 bits (150), Expect = 8e-12
Identities = 31/57 (54%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = +3
Query: 297 GLGNKTYERYNAVAIYLDKRLKELGATRVFELGLGDDDAN-IEHDFITWKDKFWPAV 464
GLGN TYE YNA+A +D + LGATRV LGLGDD A +E D++ WKD P +
Sbjct: 155 GLGNHTYEYYNAMAKKVDAAMTRLGATRVGNLGLGDDAAGMLEEDYLQWKDDTLPEI 211
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 44.8 bits (101), Expect = 7e-06
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = +2
Query: 8 AGRSLVVFYGSQTGTAEEFAGRLAKEGIRYRMKRMVADPEECDMEELTKLQEISNSLAVF 187
+G L + + S GTAE A RL K + ++ +EEL + + V
Sbjct: 724 SGPPLTILFASDGGTAENVAKRLQNRASARGSKCKIMAMDDFPIEELGNEKNV-----VV 778
Query: 188 CMATYGEGDPTDNSMEFYEWLKNGDPDLTGLNYAVCRF 301
++T G+G+ N EF+E +K D +L+ L Y V F
Sbjct: 779 LVSTAGQGEFPQNGREFWEAIKGADLNLSELKYGVFGF 816
Score = 32.3 bits (70), Expect = 0.038
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 324 YNAVAIYLDKRLKELGATRVFELGLGDDD--ANIEHDFITWKDKFWPAV 464
YN LD R ELGA + LGLG+D E + W+ + W A+
Sbjct: 831 YNRPGKQLDARFVELGAAPLVTLGLGNDQDPDGWETAYNLWEPELWKAL 879
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 31.5 bits (68), Expect = 0.067
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +2
Query: 20 LVVFYGSQTGTAEEFAGRLAKEGIRYRMKRMVADPEECDMEELTKLQEISNSLAVFCMAT 199
+ + YGS+TGTAE A L + R +V ++ ++E L + + VF +T
Sbjct: 6 IYILYGSETGTAEGLAESLFRSLTRMGYDVLVNSMDDFNLENLLRPLQ-----CVFICST 60
Query: 200 YGEGDPTDNSME 235
G+G+ N E
Sbjct: 61 TGQGEMPLNMRE 72
Score = 27.1 bits (57), Expect = 1.4
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 312 TYERYNAVAIYLDKRLKELGATRVFELGLGDDD--ANIEHDFITW 440
TY R+N + LD RL++LGA G GD+ +E F W
Sbjct: 76 TY-RFNWASKKLDSRLRQLGAQSFSSRGEGDEQHPDGVEGVFAYW 119
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 27.5 bits (58), Expect = 1.1
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 152 KLQEISNSLAVFCMATYGE--GDPTDNSMEFYEWLKNGDPD 268
K + ++ L + C+ + GDP D + E EWL D D
Sbjct: 301 KSSDYTDQLVLQCLLLMTDVAGDPEDEAEELQEWLNTDDLD 341
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.5 bits (58), Expect = 1.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 23 VVFYGSQTGTAEEFAGRLAKEGIRYRMKRMVADPEECDME 142
V+F G + T +F G++ E I Y +K + P D+E
Sbjct: 428 VMFTGRELDTFMQFGGQVVNEFINYVVKVSLKYPRPADIE 467
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 26.2 bits (55), Expect = 2.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 408 DANIEHDFITWKDKFW 455
+ N+E DFI WKD ++
Sbjct: 486 EKNVEKDFIQWKDDYY 501
>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 4.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 123 LKNVIWRNSRNCKKYQI 173
L N+ +RNS NC KY +
Sbjct: 78 LMNIFFRNSENCFKYSM 94
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 24.6 bits (51), Expect = 7.7
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 251 LTIHKTPWNCQLGLLRHRLPYKKRLTNLIFL 159
L+I PW L L LPY RL + FL
Sbjct: 376 LSIISLPWFLSLFLCTMPLPYAFRLLDFFFL 406
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,018,188
Number of Sequences: 5004
Number of extensions: 41110
Number of successful extensions: 103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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