Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_L09
(471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0889 + 8753877-8754236,8754995-8755054,8755174-8755250,875... 67 8e-12
04_04_1410 + 33363784-33364086,33364221-33364280,33364388-333644... 67 8e-12
09_06_0260 - 21911358-21911438,21911715-21911828,21911911-219120... 65 2e-11
01_06_0610 - 30587269-30587717,30587996-30588212,30588363-305884... 46 2e-05
03_06_0136 + 31933843-31934715,31934906-31935021,31935233-319354... 33 0.088
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 29 1.4
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226... 28 3.3
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 28 4.4
09_04_0382 + 17135554-17136468,17136762-17136833,17137675-171377... 27 5.8
08_02_1599 - 28132748-28132776,28132855-28133113 27 7.6
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755... 27 7.6
>08_01_0889 +
8753877-8754236,8754995-8755054,8755174-8755250,
8755481-8755622,8755736-8755772,8755852-8755921,
8756021-8756212,8756321-8756413,8756545-8756773,
8756861-8756944,8757041-8757192,8757279-8757375,
8757576-8757725,8757813-8757890,8757982-8758104,
8758169-8758315,8758418-8758472,8758807-8758874
Length = 737
Score = 66.9 bits (156), Expect = 8e-12
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Frame = +2
Query: 14 RSLVVFYGSQTGTAEEFAGRLAKEG-IRY-RMKRMVADPEECDMEELTKLQEISNS-LAV 184
+ + VF+G+QTGTAE FA LA+E RY + V D +E ME+ + + +++
Sbjct: 102 KRVTVFFGTQTGTAEGFAKALAEEAKSRYDKAIFKVVDLDEYAMEDEEYEERLKKEKISL 161
Query: 185 FCMATYGEGDPTDNSMEFYEWLKNGDPDLTGLN 283
F +ATYG+G+PTDN+ FY+W G+ LN
Sbjct: 162 FFVATYGDGEPTDNAARFYKWFTEGNERGVWLN 194
Score = 64.5 bits (150), Expect = 4e-11
Identities = 28/54 (51%), Positives = 35/54 (64%)
Frame = +3
Query: 297 GLGNKTYERYNAVAIYLDKRLKELGATRVFELGLGDDDANIEHDFITWKDKFWP 458
GLGN+ YE +N VA +D+ L E G R+ +GLGDDD IE DF WK+ WP
Sbjct: 202 GLGNRQYEHFNKVAKVVDELLVEQGGKRLVPVGLGDDDQCIEDDFNAWKETLWP 255
>04_04_1410 +
33363784-33364086,33364221-33364280,33364388-33364464,
33365032-33365089,33365179-33365262,33365358-33365394,
33365855-33365924,33366655-33366849,33366947-33367039,
33367187-33367418,33367515-33367598,33368205-33368301,
33368510-33368577,33368662-33368739,33368823-33368945,
33369059-33369172,33369288-33369368
Length = 617
Score = 66.9 bits (156), Expect = 8e-12
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = +3
Query: 297 GLGNKTYERYNAVAIYLDKRLKELGATRVFELGLGDDDANIEHDFITWKDKFWP 458
GLGN+ YE +N VA +D+ L+E G R+ +GLGDDD IE DF WK++ WP
Sbjct: 183 GLGNRQYEHFNKVAKVVDELLEEQGGKRLVPVGLGDDDQCIEDDFTAWKEQVWP 236
Score = 62.1 bits (144), Expect = 2e-10
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Frame = +2
Query: 14 RSLVVFYGSQTGTAEEFAGRLAKEG-IRYRMKRM-VADPEECDMEELTKLQEI-SNSLAV 184
+ + VF+G+QTGTAE FA +A+E RY V D ++ E+ +++ ++ +
Sbjct: 83 KRVTVFFGTQTGTAEGFAKAMAEEARARYEKAVFKVVDLDDYAAEDEEYEEKLRKETIVL 142
Query: 185 FCMATYGEGDPTDNSMEFYEWLKNGDPD---LTGLNYAV 292
+ATYG+G+PTDN+ FY+W G L L YAV
Sbjct: 143 LFLATYGDGEPTDNAARFYKWFTEGKEKEVWLKDLKYAV 181
>09_06_0260 -
21911358-21911438,21911715-21911828,21911911-21912033,
21912342-21912419,21912498-21912647,21913505-21913601,
21913679-21913860,21913899-21913982,21914243-21914303,
21914414-21914506,21914588-21914782,21914937-21915006,
21915536-21915572,21915654-21915737,21915828-21915885,
21916008-21916084,21916185-21916244,21916325-21916687
Length = 668
Score = 65.3 bits (152), Expect = 2e-11
Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Frame = +2
Query: 11 GRSLV-VFYGSQTGTAEEFAGRLAKEG-IRY-RMKRMVADPEECDMEELTKLQEISNSL- 178
GR V VF+G+QTGTAE FA LA+E RY + V D +E ++ Q++ +
Sbjct: 101 GRQRVAVFFGTQTGTAEGFAKALAEEAKSRYDKAVFKVLDLDEYAADDEEYEQKLKKEII 160
Query: 179 AVFCMATYGEGDPTDNSMEFYEWLKNGD 262
A+F +ATYG+G+PTDN+ FY+W G+
Sbjct: 161 ALFFVATYGDGEPTDNAARFYKWFGEGN 188
Score = 64.9 bits (151), Expect = 3e-11
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = +3
Query: 297 GLGNKTYERYNAVAIYLDKRLKELGATRVFELGLGDDDANIEHDFITWKDKFWP 458
GLGN+ YE +N V +D+ L E G R+ LGLGDDD IE DF WK+ WP
Sbjct: 203 GLGNRQYEHFNKVGKVVDQLLAEQGGKRIVPLGLGDDDQCIEDDFNAWKELLWP 256
>01_06_0610 -
30587269-30587717,30587996-30588212,30588363-30588482,
30589092-30589202,30589300-30589374,30589940-30590031,
30590121-30590302,30590479-30590570,30591179-30591283,
30591374-30591451,30591553-30591705
Length = 557
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +3
Query: 297 GLGNKTYERYNAVAIYLDKRLKELGATRVFELGLGDDD--ANIEHDFITWKDKFWPAV 464
GLG+ Y++YN A LDKRL LGA + ++GLGDD + E W W ++
Sbjct: 102 GLGDSGYQKYNFAAKKLDKRLLHLGAEPIIQVGLGDDQHPSGYEGALDPWLLSLWESL 159
Score = 40.3 bits (90), Expect = 8e-04
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Frame = +2
Query: 8 AGRSLVVFYGSQTGTAEEFAGRLAKEGIRYRMKRMVADPEECDMEELTKLQEISNSLAVF 187
A L+V Y S+TG A + A R+ ++ R + P M+ S VF
Sbjct: 7 ADSRLLVIYASETGNAMDAAERVGRQAERGGCPAVDVLP----MDSFDPSCLPSERFVVF 62
Query: 188 CMATYGEGDPTDNSMEFYEWL--KN-GDPDLTGLNYAV 292
++T G+GDP D+ F+ +L KN G L G+ YAV
Sbjct: 63 VVSTTGQGDPPDSMKGFWRYLLKKNLGARWLEGVRYAV 100
>03_06_0136 +
31933843-31934715,31934906-31935021,31935233-31935408,
31935846-31936036,31936119-31936205,31936304-31936461,
31936555-31936765,31936856-31937005
Length = 653
Score = 33.5 bits (73), Expect = 0.088
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 297 GLGNKTY-ERYNAVAIYLDKRLKELGATRVFELGLGD-DDANIEHDFITW 440
G+G++ Y E +NA A + L+ LGA V +G GD D ++E F W
Sbjct: 150 GVGSRAYGETFNAAARSFSRWLRALGAAEVVAVGEGDVDGGDLEVVFEEW 199
>01_05_0687 +
24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +2
Query: 119 DPEECDMEELTKLQEISNSLAVFCMATYGEGDPTDNSMEFYEWLKNGDPD 268
DP+ +++ + +QE + A+ + TYGE D + S+ L++G+PD
Sbjct: 597 DPDAAEVDVVVGMQEQAAGSALAMLVTYGETDTSAVSVS--PVLESGEPD 644
>02_05_0902 +
32620668-32621209,32621847-32622258,32622471-32622675,
32622712-32622806,32622945-32623557,32623652-32623820,
32624392-32624749,32625226-32625336,32626207-32626561,
32627262-32627484,32627837-32628058,32628628-32628781
Length = 1152
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 137 MEELTKLQEISNSLAVFCMATYGEGDPTDNSMEFYEWLKNGDPD 268
+E+ +L + L ++ + YGE D T N ++ +E + PD
Sbjct: 342 LEKAVELNPDNEELLLYLLKAYGERDSTQNLLDKWEQILMKHPD 385
>06_03_0092 + 16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 27.9 bits (59), Expect = 4.4
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +2
Query: 41 QTGTAEEFAGRLAK--EGIRYRM---KRMVADPEECDMEELTKLQEISNSL 178
+TG +E +L K E + +R+ KRM D EE +EL+KLQ +L
Sbjct: 1424 ETGALKEAKDKLEKKVEELTWRVQLEKRMRTDLEEAKAQELSKLQSSMEAL 1474
>09_04_0382 +
17135554-17136468,17136762-17136833,17137675-17137704,
17138744-17138817,17140022-17140367
Length = 478
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 282 FSPVRSGSPFFNHS*NSMELSVGSPSP*VAIQKTANEFD 166
F+P+ G P + + VG P VA+Q N+FD
Sbjct: 208 FAPLGMGDPALGNGLMPRAVPVGLPGAAVAMQTAVNQFD 246
>08_02_1599 - 28132748-28132776,28132855-28133113
Length = 95
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 101 FCILCLP*LDARRIPQ 54
FC LCLP L + R+PQ
Sbjct: 19 FCCLCLPPLSSLRVPQ 34
>03_05_0728 - 27174157-27174408,27175316-27175364,27175454-27175536,
27175673-27175753,27175838-27175894,27176103-27176202,
27176280-27176350,27176427-27176567,27176657-27176863,
27177442-27177612,27177735-27177815,27177887-27177940,
27178040-27178154,27178302-27178441,27178976-27179197,
27179278-27179376,27179461-27179580,27179776-27179981,
27180072-27180249,27180426-27180486,27180587-27180696,
27180765-27180896,27181124-27181165,27181592-27181762,
27181806-27181808,27181848-27181974,27182130-27182164,
27182982-27183083,27183167-27183224,27183314-27183415,
27183513-27183659,27183744-27183880,27183973-27184122,
27184234-27184393,27184930-27185075,27185162-27185305,
27185535-27185663,27186376-27186420,27187103-27187192,
27187473-27187475
Length = 1506
Score = 27.1 bits (57), Expect = 7.6
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +2
Query: 41 QTGTAEEFAGRLAK--EGIRYRM---KRMVADPEECDMEELTKLQE 163
+TG +E +L K E + +R+ KR+ D EE +E+ KLQE
Sbjct: 870 ETGALKEAKDKLEKRVEELTWRLGLEKRLRTDLEEAKAQEIAKLQE 915
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,797,810
Number of Sequences: 37544
Number of extensions: 259423
Number of successful extensions: 506
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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