Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L07
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ...    37   0.001
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   1.4  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    27   1.4  
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch...    26   2.4  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    26   2.4  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    25   3.2  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    22   3.3  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   4.2  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   4.2  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    24   7.3  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    24   7.3  

>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 36.7 bits (81), Expect = 0.001
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +2

Query: 218 AALRSPKIKTKKEPLEIYKWILLLIPVGSFGLGSWQVYRLQWKLNLIDRM 367
           + L    ++ KK    +   +L  +P+ +F LG+WQV R +WK+ +I+ +
Sbjct: 24  STLEGTTVRPKKNKFLV--GLLSAVPIVTFALGTWQVKRREWKMGIINTL 71


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 101 NMIMLKSMGKLRGTVLFSNINNWGKSKIFSATRLKTDVKAAL 226
           N++M  S  +    +++ ++N W K  +FS  R+   +K  L
Sbjct: 271 NVVMRDSETREAINIVYKDVNEWPKQLLFSQNRILEKLKIFL 312


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 172 SPIINIRKQHSTP*FTHTFKHNHIYYN--NRKSLMAVILDRY 53
           SP++ +R + S P  T + + NH  YN  ++KS    ++++Y
Sbjct: 593 SPVLRLRTRDSNPSNTDSRESNHKKYNHFHQKSQTRRVMEQY 634


>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
           Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 303

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 211 ISFKSCSTKNFTLSPIINIRKQ 146
           +SFK  ST+N  L+P+I I+++
Sbjct: 1   MSFKEVSTENGVLTPLITIKEK 22


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 215 KAALRSPKIKTKKEPLEIYKW-ILLLIPVGSF 307
           + +L  P++  KKE L + KW IL  + VG F
Sbjct: 11  QTSLLYPEVSRKKEELSVNKWTILPALWVGGF 42


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 146 LFSNINNWGKSKIFSATRLKTDVKAALRSPKIKTKKEPLEIYKWILLL 289
           LF NI +     ++    LKT +  A+RS  +  +++ LE    + LL
Sbjct: 504 LFENITSSLNENLYMVDMLKTLIIPAVRSHDLPIREKGLECLSLVCLL 551


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 21.8 bits (44), Expect(2) = 3.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 113 LKSMGKLRGTVLFSNINNWGKSKIFSATRL 202
           L  +GK    +LFS    W K ++ S T L
Sbjct: 311 LVDLGKSLSRILFSAGLGWVKGEVISRTIL 340



 Score = 21.8 bits (44), Expect(2) = 3.3
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 242 KTKKEPLEIYKWILLLIPVGSFGLGSWQVYRLQWKLNLIDRMQAISNAV 388
           +T   PL    W L L+ VG+    SW   R+ + L+ I   +A++NA+
Sbjct: 337 RTILAPLAAALWPLSLLKVGNILGNSW---RIAFNLS-IKAGEALANAL 381


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1136

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 166  IINIRKQHSTP*FTHTFKHNHIYYNNRKSLMAVILDRYISLKETISK 26
            +IN+  Q        ++++ H  Y +  +++   L RYIS  E I K
Sbjct: 1010 MINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRYISTTELIGK 1056


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 170 GKSKIFSATRLKTDVKAALRSPKIKTKKEPLE 265
           G + +   ++L  +   AL SPK K +KE LE
Sbjct: 307 GSTPVDVLSKLTPEFHTALSSPKWKDRKEALE 338


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 391 WYSI*YCLHPINKVQ 347
           WYS  YC H +NK+Q
Sbjct: 190 WYS--YCYHSLNKLQ 202


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 299 PLE-STAKSICKFREVPF*FLF*GILKRPLHQF 204
           PLE S+A+ + K R +PF  L   IL   LH F
Sbjct: 254 PLELSSAEKLEKLRAIPFQDLADNILNLRLHTF 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,575,891
Number of Sequences: 5004
Number of extensions: 29975
Number of successful extensions: 60
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)