Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L07
         (392 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0045 - 5251234-5251305,5251362-5251419,5252256-5252539,525...    32   0.19 
03_01_0577 + 4261249-4262055,4262149-4262203,4262293-4262468,426...    27   4.1  
08_02_1357 - 26359701-26359804,26360749-26360852,26360967-26361379     27   5.4  
12_01_0057 + 489788-490882,490891-492207                               26   9.4  
11_01_0057 + 434293-436698                                             26   9.4  
02_01_0389 - 2816878-2817390,2817552-2817670,2817803-2817865,281...    26   9.4  

>03_02_0045 -
           5251234-5251305,5251362-5251419,5252256-5252539,
           5252836-5253019,5253564-5253814,5253921-5254024,
           5254143-5254281
          Length = 363

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 302 SFGLGSWQVYRLQWKLNLID 361
           +FGLGSWQ++R Q K+ ++D
Sbjct: 67  TFGLGSWQLFRRQEKIEMLD 86


>03_01_0577 + 4261249-4262055,4262149-4262203,4262293-4262468,
            4262554-4262718,4262811-4263178,4263225-4263861,
            4263952-4265844,4266325-4266672
          Length = 1482

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 272  KWILLLIPVGSFGLGSWQVYRLQWKLNLI 358
            ++ +LL+ VGS G+G    + L W+L L+
Sbjct: 1032 RYAVLLMAVGSAGVGLGICFGLDWRLTLV 1060


>08_02_1357 - 26359701-26359804,26360749-26360852,26360967-26361379
          Length = 206

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 366 ILSIRFSFHCRRYTCHEPNPNEPTGINSKIHL*ISRGSFL-VFILGDLKAAF 214
           +L++ F    RR+TCH    +    + ++    ++RG  L V+  G+  A F
Sbjct: 51  VLNVPFGLEQRRWTCHSTTNSTEVALAARQRRWVARGGDLRVYDAGEEDAIF 102


>12_01_0057 + 489788-490882,490891-492207
          Length = 803

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +2

Query: 110 MLKSMGKLRGTVLFSNINNWG-----KSKIFSATRLKTDVKAALRSPKIKTKKEP 259
           +L  M  +RG V  + INNWG      ++ +S   L   V  A+ +P IK   +P
Sbjct: 395 VLALMLNIRGIVEVAAINNWGDTMKATAEHYSTLTLSMVVITAVATPLIKLLYDP 449


>11_01_0057 + 434293-436698
          Length = 801

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +2

Query: 110 MLKSMGKLRGTVLFSNINNWG-----KSKIFSATRLKTDVKAALRSPKIKTKKEP 259
           +L  M  +RG V  + INNWG      ++ +S   L   V  A+ +P IK   +P
Sbjct: 393 VLALMLNIRGIVEVAAINNWGDTMKATAEHYSTLTLSMVVITAVATPLIKLLYDP 447


>02_01_0389 -
           2816878-2817390,2817552-2817670,2817803-2817865,
           2818229-2818355,2818607-2818827,2818973-2819136,
           2819766-2819846,2820657-2820728,2820857-2820995,
           2821206-2821690,2821995-2822550,2822610-2822666,
           2822705-2822774
          Length = 888

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 295 WNQQQNPFVNFERFLFSFYFRGS*SGLY-ISFKSCSTKNFTLSPIINIRKQH 143
           WN Q  P+     FLF+    G+  GL   S    +TKN TL PI+N  + +
Sbjct: 328 WNTQ--PYT--PPFLFADSLSGTVQGLASYSVSLVATKNATLPPILNAMEMY 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,159,486
Number of Sequences: 37544
Number of extensions: 159845
Number of successful extensions: 320
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)