Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L07
         (392 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006651-9|AAF39867.1|  323|Caenorhabditis elegans Surfeit homol...    45   2e-05
Z92786-3|CAB63202.1|  488|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U50309-2|AAG24136.2|  334|Caenorhabditis elegans Seven tm recept...    27   6.3  
AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical ...    26   8.4  

>AC006651-9|AAF39867.1|  323|Caenorhabditis elegans Surfeit homolog
           protein 1 protein.
          Length = 323

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
 Frame = +2

Query: 242 KTKKEPLEIYKW-----ILLLIPVGSFGLGSWQVYRLQWKLNLIDRMQAISN 382
           K+KK    I KW     ++L IPV +F LG WQ +RL+WKL+LI+ ++   N
Sbjct: 71  KSKKSKKSI-KWSTGSVLMLTIPVFAFSLGIWQTFRLKWKLDLIEHLKGRLN 121


>Z92786-3|CAB63202.1|  488|Caenorhabditis elegans Hypothetical
           protein F47H4.6 protein.
          Length = 488

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = +2

Query: 95  IINMIMLKSMGKLRGTVLFSNINNWGKSKIFSATR 199
           ++NMI+L S  +  G     +++ W ++++F ++R
Sbjct: 357 VLNMIVLNSSTESNGIEHLVHLDQWREARVFESSR 391


>U50309-2|AAG24136.2|  334|Caenorhabditis elegans Seven tm receptor
           protein 146 protein.
          Length = 334

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 253 GTSRNLQMDFAVDSSGFIWIRLMA 324
           GT RN+   FAV  S + WI ++A
Sbjct: 35  GTYRNVMFSFAVYFSVYAWIEILA 58


>AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical
           protein H28O16.1c protein.
          Length = 503

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 137 GTVLFSNINNWGKSKIFSATRLKTDVKAALRSPKIKTKKEPLEIYKWILLLIPVG 301
           G V+  N  + GK  I +A R + +VKA    P++  ++  +   K +  L+P+G
Sbjct: 100 GVVVLGNPID-GKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIG 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,430,829
Number of Sequences: 27780
Number of extensions: 159229
Number of successful extensions: 346
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)