Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L07
         (392 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   0.72 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   5.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   6.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.7  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 0.72
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 62  QNNCHQ*LSI-VIINMIMLKSMGKLRGTVLFSNINNWGKSKIFSATRLKTDVKAALRSPK 238
           QN   Q + I V  N         ++  + F++++N  + K      LKTD   +  SP 
Sbjct: 565 QNTTDQSMDIDVCDNQTYTSLQMAMKNPIEFTDLSN--ERKYEDVCVLKTDTNQSCPSPP 622

Query: 239 IKTKKE 256
           + TK++
Sbjct: 623 VTTKRD 628


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +2

Query: 308 GLGSWQVY 331
           G+GSW+VY
Sbjct: 150 GMGSWEVY 157


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 82  SLMAVILDRYISLKETISKDK 20
           +L+A+ +DRYI++ + I   K
Sbjct: 276 NLVAISIDRYIAVTQPIKYAK 296


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +2

Query: 281 LLLIPVGSFGLGSWQVYRLQWKLNLID 361
           L ++  G+ G+G+  +    + LN+ D
Sbjct: 141 LWVLDTGTIGIGNTTIQACPYTLNIFD 167


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 324 CHEPNPNEPTG 292
           C EP  N PTG
Sbjct: 714 CQEPVTNRPTG 724


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,176
Number of Sequences: 438
Number of extensions: 2144
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)