Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_L06
(503 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117; Eukar... 292 3e-78
UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27; Euka... 247 1e-64
UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=... 210 1e-53
UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal ... 187 1e-46
UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillar... 170 2e-41
UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17; ... 158 8e-38
UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1; Encepha... 138 7e-32
UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7; A... 137 2e-31
UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19; ... 134 1e-30
UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2; A... 128 7e-29
UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=... 127 1e-28
UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1; Can... 126 2e-28
UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1; Cenar... 126 2e-28
UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole gen... 108 6e-23
UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4; T... 108 6e-23
UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultu... 107 1e-22
UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13 prot... 95 6e-19
UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6; H... 93 3e-18
UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 - R... 65 1e-09
UniRef50_Q8FV54 Cluster: Ribose ABC transporter, periplasmic D-r... 36 0.69
UniRef50_Q5CYT2 Cluster: 3CCCH domain containing protein; n=2; C... 35 0.91
UniRef50_A1CL62 Cluster: Ribosomal protein S15, putative; n=7; E... 35 0.91
UniRef50_UPI00015B5B76 Cluster: PREDICTED: similar to GA18084-PA... 34 2.1
UniRef50_Q6CWX5 Cluster: Similar to sp|Q9C2M3 Neurospora crassa ... 34 2.1
UniRef50_Q6D8R0 Cluster: Putative membrane protein; n=1; Pectoba... 33 3.7
UniRef50_A5V7X6 Cluster: TonB-dependent receptor precursor; n=1;... 33 3.7
UniRef50_Q58MZ4 Cluster: T4-like baseplate tail tube cap; n=1; C... 33 3.7
UniRef50_A2QE31 Cluster: Remark: alternate name for S. cerevisia... 33 3.7
UniRef50_Q3A384 Cluster: Predicted PTS family phosphotransferase... 33 4.8
UniRef50_Q5P8U4 Cluster: Helicase/SNF2 family domain protein; n=... 32 6.4
UniRef50_A3VN55 Cluster: 3-dehydroquinate synthase; n=3; Alphapr... 32 6.4
UniRef50_A1V9P0 Cluster: ComEC/Rec2-related protein; n=2; Desulf... 32 6.4
>UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117;
Eukaryota|Rep: 40S ribosomal protein S13 - Homo sapiens
(Human)
Length = 151
Score = 292 bits (717), Expect = 3e-78
Identities = 137/151 (90%), Positives = 147/151 (97%)
Frame = +3
Query: 48 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
MGRMHAPGKG+SQSALPYRRSVPTWLKLT+DDVKEQI+KL KKGLTPSQIGV+LRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 228 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 407
AQVRFVTG KILRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 408 RIHRLARYYKTKSVLPPNWKYESSTASALVA 500
RIHRLARYYKTK VLPPNWKYESSTASALVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151
>UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27;
Eukaryota|Rep: 40S ribosomal protein S13-1 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 151
Score = 247 bits (605), Expect = 1e-64
Identities = 118/151 (78%), Positives = 130/151 (86%)
Frame = +3
Query: 48 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
MGRMH+ GKGIS SALPY+RS P+WLK T DV E I K KKGLTPSQIGV+LRDSHG+
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60
Query: 228 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 407
QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61 PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Query: 408 RIHRLARYYKTKSVLPPNWKYESSTASALVA 500
RIHRLARYYK LPP WKYES+TAS LVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
>UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=39;
Eukaryota|Rep: 40S ribosomal protein S13, putative -
Leishmania major
Length = 151
Score = 210 bits (513), Expect = 1e-53
Identities = 97/151 (64%), Positives = 122/151 (80%)
Frame = +3
Query: 48 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
M RMH G+G + SALPYRR+ P WLK+ + +V + + K +KG+ PSQIG+ LRDS G+
Sbjct: 1 MVRMHGNGRGKASSALPYRRTPPAWLKIASRNVVKMVCKSSRKGMMPSQIGMELRDSMGI 60
Query: 228 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 407
AQV+ VTG+KILRI+K GLAP++PEDLY+L+K+A MRKHLER+ D+D+K+RLILVES
Sbjct: 61 AQVKNVTGRKILRILKHNGLAPEIPEDLYFLVKRATQMRKHLERHTTDRDTKYRLILVES 120
Query: 408 RIHRLARYYKTKSVLPPNWKYESSTASALVA 500
RIHRLARYYK LPP WKYESSTASA+VA
Sbjct: 121 RIHRLARYYKRVKQLPPTWKYESSTASAMVA 151
>UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal
protein S13; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S13 - Rattus norvegicus
Length = 131
Score = 187 bits (455), Expect = 1e-46
Identities = 99/151 (65%), Positives = 111/151 (73%)
Frame = +3
Query: 48 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
MG MHAP K +SQS LPY SV WLK T+DD+KEQI+KL KKGLTPSQIGV LRD+HG
Sbjct: 1 MGAMHAPRKALSQSVLPYHHSVLMWLKSTSDDMKEQIYKLAKKGLTPSQIGVTLRDTHG- 59
Query: 228 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 407
LA DLP DLY+LIKKAVA++KHLERNRKDKD+KF L L ES
Sbjct: 60 -------------------LALDLPGDLYHLIKKAVAVQKHLERNRKDKDAKFCLSLTES 100
Query: 408 RIHRLARYYKTKSVLPPNWKYESSTASALVA 500
RIH LARY KTK +LPP+WKYES +ASALVA
Sbjct: 101 RIHPLARYCKTKRMLPPSWKYESPSASALVA 131
>UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillardia
theta|Rep: 40S ribosomal protein S13 - Guillardia theta
(Cryptomonas phi)
Length = 147
Score = 170 bits (413), Expect = 2e-41
Identities = 75/136 (55%), Positives = 104/136 (76%)
Frame = +3
Query: 72 KGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG 251
KGI+ S +P+ R+ P W+K + + + E I L KKGL PSQIG LRDS G+ V+ + G
Sbjct: 6 KGIASSLIPFERNAPLWVKDSKEKINEIICNLAKKGLVPSQIGSYLRDSAGIPLVKNIAG 65
Query: 252 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 431
+ I++I+K GL P++PEDL++LIKKA+ ++KHLERN+KDKDSKFRLIL ES+IHRL+RY
Sbjct: 66 RNIVKILKKNGLNPEIPEDLFFLIKKAINIKKHLERNKKDKDSKFRLILTESKIHRLSRY 125
Query: 432 YKTKSVLPPNWKYESS 479
YK +P NW+++SS
Sbjct: 126 YKRIQRIPINWRFDSS 141
>UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17;
Euryarchaeota|Rep: 30S ribosomal protein S15P/S13e -
Methanococcus jannaschii
Length = 153
Score = 158 bits (383), Expect = 8e-38
Identities = 74/150 (49%), Positives = 105/150 (70%)
Frame = +3
Query: 48 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
M RMHA +G S S P R+ VP W++ T + V++ + +L KKG +QIG++LRD++G+
Sbjct: 1 MARMHARKRGRSGSKRPVRKEVPEWVQYTPEQVEQLVVELAKKGYQSAQIGLILRDTYGI 60
Query: 228 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 407
V+ +TGKKI +IMK GL P +PEDL L+++AV +RKHLE++ KD SK L L+ES
Sbjct: 61 PDVKLITGKKISKIMKEHGLYPKVPEDLLNLMRRAVNLRKHLEQHPKDLHSKRGLQLIES 120
Query: 408 RIHRLARYYKTKSVLPPNWKYESSTASALV 497
+I RL +YYK+K VLP +W+Y TA LV
Sbjct: 121 KIRRLVKYYKSKGVLPADWRYTPETARLLV 150
>UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S13
- Encephalitozoon cuniculi
Length = 148
Score = 138 bits (334), Expect = 7e-32
Identities = 61/140 (43%), Positives = 88/140 (62%)
Frame = +3
Query: 48 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
M +MH+ GKG S S PY + PTWL + D++K + ++G KG+ IG LRD +G+
Sbjct: 1 MAKMHSSGKGRSGSVKPYATAFPTWLTKSVDEIKSDVIQMGNKGVPAPDIGTRLRDEYGI 60
Query: 228 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 407
+ V G+ I R ++ G+ P +P DL L+ +A +R HL RKD +K+RLILV S
Sbjct: 61 GKASDVLGESITRFLQRNGVVPKIPHDLESLVHRANTLRSHLNIYRKDNSAKYRLILVSS 120
Query: 408 RIHRLARYYKTKSVLPPNWK 467
R++R+ARYYK K +P NWK
Sbjct: 121 RMYRVARYYKRKMRIPGNWK 140
>UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Archaeoglobus fulgidus
Length = 152
Score = 137 bits (331), Expect = 2e-31
Identities = 66/141 (46%), Positives = 97/141 (68%)
Frame = +3
Query: 48 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
M R+HA +G S S YR S P W+ ++ ++V++++ +L +G PS IG++LRD +G+
Sbjct: 1 MARIHARRRGKSGSKRIYRDSPPEWVDMSPEEVEKKVLELYNEGYEPSMIGMILRDRYGI 60
Query: 228 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 407
V+ VTGKKI +I+K G+ PEDL LIKKA+ +R HLE +RKDK ++ L L+E+
Sbjct: 61 PSVKQVTGKKIQKILKEHGVEIKYPEDLKALIKKALKLRAHLEVHRKDKHNRRGLQLIEA 120
Query: 408 RIHRLARYYKTKSVLPPNWKY 470
+I RL+ YYK K VLP +WKY
Sbjct: 121 KIWRLSSYYKEKGVLPADWKY 141
>UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Pyrococcus abyssi
Length = 158
Score = 134 bits (323), Expect = 1e-30
Identities = 69/157 (43%), Positives = 99/157 (63%), Gaps = 7/157 (4%)
Frame = +3
Query: 48 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
M RMHA +G S S P R + P WL+ T +D++ + KL K+G + + IG +LRD +G+
Sbjct: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
Query: 228 AQVRFVT-----GKK--ILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKF 386
V+ +K I RI++ GLAP++PEDL +LIK+AV +RKHLE++ KD S
Sbjct: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
Query: 387 RLILVESRIHRLARYYKTKSVLPPNWKYESSTASALV 497
L L+ES+I RL +YYK K LP +W+Y+ A LV
Sbjct: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
>UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Nanoarchaeum equitans
Length = 154
Score = 128 bits (309), Expect = 7e-29
Identities = 62/148 (41%), Positives = 90/148 (60%), Gaps = 2/148 (1%)
Frame = +3
Query: 48 MGRMHAPGK--GISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSH 221
M R+HA + G S S P R + P W + V+ +I +L K+G +P+ IG++LRD +
Sbjct: 1 MSRLHAHKRYHGQSGSKRPLRTTKPEWAPYDKEFVENKIIELAKQGYSPAMIGLILRDQY 60
Query: 222 GVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILV 401
G+ VR GK + ++ GL PD+P DL YL+K+A + KH+E N +D +K L+
Sbjct: 61 GIPDVRLYIGKSLQDFLEEKGLLPDIPWDLIYLLKRAYRVYKHIELNPRDTQAKRNYQLI 120
Query: 402 ESRIHRLARYYKTKSVLPPNWKYESSTA 485
S+IHRLA+YYK K VLP +WKY A
Sbjct: 121 ISKIHRLAKYYKRKGVLPKDWKYSIEIA 148
>UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=1;
Bigelowiella natans|Rep: Small subunit ribosomal protein
S13 - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 183
Score = 127 bits (307), Expect = 1e-28
Identities = 64/145 (44%), Positives = 94/145 (64%), Gaps = 1/145 (0%)
Frame = +3
Query: 48 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKG-LTPSQIGVMLRDSHG 224
MG+M++ GKGIS + +PYR+ W LT+ ++ + I L K L PS+IG++LRD
Sbjct: 1 MGKMYSKGKGISSTTVPYRKYSCEWKGLTSQNLIKIIANLAKNNNLPPSKIGLVLRDEKL 60
Query: 225 VAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 404
V R ++G I +I++ GL P +PEDL+YLIKKA ++ HL + D +++ L L+E
Sbjct: 61 VVDTRNISGMNISKILRLKGLVPLVPEDLFYLIKKANKIKAHLSDFKHDLANRYHLNLIE 120
Query: 405 SRIHRLARYYKTKSVLPPNWKYESS 479
S I+RL+RYYK LP NWKY S+
Sbjct: 121 SHIYRLSRYYKRIFRLPKNWKYISN 145
>UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Ribosomal
S13S15-like protein - Candidatus Nitrosopumilus
maritimus SCM1
Length = 149
Score = 126 bits (305), Expect = 2e-28
Identities = 58/146 (39%), Positives = 90/146 (61%)
Frame = +3
Query: 48 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
MGRMH G S S P P+W+ + +++E + K K GLTPSQIG+ LRD H +
Sbjct: 1 MGRMHTHRHGKSHSIRPATLRAPSWITQSPAEIEELVIKYSKDGLTPSQIGIKLRDQHSI 60
Query: 228 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 407
++ +T K I I++ L ++PEDL ++KKAV +++HL+ N+ D+ + L L+E+
Sbjct: 61 PLIKPITKKTIGEILEENDLKAEMPEDLENIVKKAVGLQRHLKENKGDRRNVRSLELIEA 120
Query: 408 RIHRLARYYKTKSVLPPNWKYESSTA 485
++HRL+ YYK +P WKY+S A
Sbjct: 121 KVHRLSVYYKKIGRIPATWKYKSVVA 146
>UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1;
Cenarchaeum symbiosum|Rep: Ribosomal protein S15P/S13E -
Cenarchaeum symbiosum
Length = 148
Score = 126 bits (305), Expect = 2e-28
Identities = 60/146 (41%), Positives = 91/146 (62%)
Frame = +3
Query: 48 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
MGR+H+ G S S P P+W++ +V++ I K K+GL PSQIG LRD H +
Sbjct: 1 MGRLHSHRHGKSHSIRPSSPKAPSWIQ-GPGEVEDLIVKYAKEGLAPSQIGSKLRDQHAI 59
Query: 228 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 407
R +TGK + +IM+ G P+LPEDL +++KAV +++HL N+ D+ + L L+E+
Sbjct: 60 PLTRPITGKSVTQIMEEHGATPELPEDLNNIVQKAVGLQRHLRANKGDRRNVRSLELIEA 119
Query: 408 RIHRLARYYKTKSVLPPNWKYESSTA 485
++HRL YYK +P +WKY+S A
Sbjct: 120 KVHRLDVYYKRIGRIPKDWKYKSVVA 145
>UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_187, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 129
Score = 108 bits (260), Expect = 6e-23
Identities = 49/61 (80%), Positives = 55/61 (90%)
Frame = +3
Query: 285 LAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNW 464
L P++PEDLY+LIKKAVA+RKHLER+RKDKDSKFRLI+VESRIHRLARYYK LPP W
Sbjct: 69 LGPEIPEDLYHLIKKAVAIRKHLERSRKDKDSKFRLIVVESRIHRLARYYKRTKKLPPVW 128
Query: 465 K 467
K
Sbjct: 129 K 129
>UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S15P/S13e -
Picrophilus torridus
Length = 146
Score = 108 bits (260), Expect = 6e-23
Identities = 55/142 (38%), Positives = 83/142 (58%)
Frame = +3
Query: 48 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
M RMH +G S S R P+W++ + D++KE I K+ K+G+T S IG+ LRD + +
Sbjct: 1 MARMHTRKRGRSGSKRIEVRERPSWIQYSDDEIKEMIVKMRKQGMTKSMIGIRLRDQYAI 60
Query: 228 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 407
R V K+ +++K L D+PEDL LI++ KHL N+ D ++K + L+ S
Sbjct: 61 PGTRPVLHMKLGQVLKENNLESDVPEDLQALIERYKRAMKHLSLNKHDMNNKRKAQLIMS 120
Query: 408 RIHRLARYYKTKSVLPPNWKYE 473
++ RL RYYK S LP +W E
Sbjct: 121 KMLRLIRYYKRTSRLPQDWSLE 142
>UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultured
marine group II euryarchaeote 37F11|Rep: 30S ribosomal
protein S15 - uncultured marine group II euryarchaeote
37F11
Length = 151
Score = 107 bits (258), Expect = 1e-22
Identities = 54/150 (36%), Positives = 84/150 (56%)
Frame = +3
Query: 48 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
M RM+A +G S S+ P+ P W A +++ I + K G++ +QIG +LRD H V
Sbjct: 1 MARMYASKRGKSGSSKPFMTEAPEWSNKDAKEIESLILQYFKDGMSTAQIGTILRDKHAV 60
Query: 228 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 407
VR V GK+I ++ + PEDL L+++AVA+ +HL N +D +K L L E+
Sbjct: 61 PNVRLVLGKRIGAVLSENDESGTYPEDLMNLMRQAVAIIEHLTTNSRDLHNKRSLELTEA 120
Query: 408 RIHRLARYYKTKSVLPPNWKYESSTASALV 497
+I RL YYK + L +W+Y+ +V
Sbjct: 121 KIRRLGNYYKAEGRLDSDWRYKRDQLRLIV 150
>UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13
protein; n=2; Pan troglodytes|Rep: PREDICTED: similar to
Rps13 protein - Pan troglodytes
Length = 269
Score = 95.5 bits (227), Expect = 6e-19
Identities = 44/59 (74%), Positives = 51/59 (86%)
Frame = +3
Query: 39 AANMGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRD 215
AA GR+H PGKG+S+SAL Y SVPTWLKLT+D+VKEQI+KL KKGLTP QIGV+LRD
Sbjct: 211 AAITGRIHVPGKGLSRSALLYHHSVPTWLKLTSDNVKEQIYKLTKKGLTPPQIGVILRD 269
>UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S15P/S13e -
Haloarcula marismortui (Halobacterium marismortui)
Length = 156
Score = 93.1 bits (221), Expect = 3e-18
Identities = 53/150 (35%), Positives = 80/150 (53%), Gaps = 4/150 (2%)
Frame = +3
Query: 48 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDS--H 221
M RMH +G S S P P W + D ++ ++ +L ++G +PS+IG+ LRD
Sbjct: 1 MARMHTRRRGSSDSDKPAADEPPEWSDVDEDAIEARVVELAEQGHSPSEIGLKLRDEGVQ 60
Query: 222 G--VAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLI 395
G + V TGKK+ I++ PDLPEDL L+++AV +R H++ N D +K L
Sbjct: 61 GTPIPDVSLATGKKVTEILEENEAEPDLPEDLRNLLERAVRLRDHMDENPGDYQNKRALQ 120
Query: 396 LVESRIHRLARYYKTKSVLPPNWKYESSTA 485
+S+I RL YY+ V N+ Y A
Sbjct: 121 NTQSKIRRLIDYYRGDEV-DENFTYSYDNA 149
>UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 -
Rattus norvegicus (Rat)
Length = 481
Score = 64.9 bits (151), Expect = 1e-09
Identities = 29/37 (78%), Positives = 33/37 (89%)
Frame = +3
Query: 39 AANMGRMHAPGKGISQSALPYRRSVPTWLKLTADDVK 149
+A +GRMHAPGKG+SQSALPYRRSV WLKL +DDVK
Sbjct: 441 SAIVGRMHAPGKGLSQSALPYRRSVLMWLKLMSDDVK 477
>UniRef50_Q8FV54 Cluster: Ribose ABC transporter, periplasmic
D-ribose-binding protein; n=4; Rhizobiales|Rep: Ribose
ABC transporter, periplasmic D-ribose-binding protein -
Brucella suis
Length = 355
Score = 35.5 bits (78), Expect = 0.69
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +3
Query: 108 SVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVR 239
+VPTW+K T D + +++ +L K+GL +M+ D+ G AQ +
Sbjct: 57 AVPTWMKQTEDTIVDEVAQLKKEGLVKD---LMITDAQGNAQTQ 97
>UniRef50_Q5CYT2 Cluster: 3CCCH domain containing protein; n=2;
Cryptosporidium|Rep: 3CCCH domain containing protein -
Cryptosporidium parvum Iowa II
Length = 591
Score = 35.1 bits (77), Expect = 0.91
Identities = 23/64 (35%), Positives = 34/64 (53%)
Frame = +3
Query: 117 TWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPD 296
T L++T D K + + K G+ GV+ R +HG A++R T K +LR K L P
Sbjct: 154 TELRVTNDFYKTSVCRYWKMGVK-CDAGVLCRHAHGEAELRKKTNKHLLR-RKDDQLPPS 211
Query: 297 LPED 308
+ ED
Sbjct: 212 IRED 215
>UniRef50_A1CL62 Cluster: Ribosomal protein S15, putative; n=7;
Eurotiomycetidae|Rep: Ribosomal protein S15, putative -
Aspergillus clavatus
Length = 306
Score = 35.1 bits (77), Expect = 0.91
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 318 LIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKY 470
L K + + +HL+ KDK +K L L+ + +L RY + K P W++
Sbjct: 238 LTAKIINLSRHLQSTNKDKHNKRNLRLLVHKRQKLLRYLRKKERGGPRWQH 288
>UniRef50_UPI00015B5B76 Cluster: PREDICTED: similar to GA18084-PA;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
GA18084-PA - Nasonia vitripennis
Length = 803
Score = 33.9 bits (74), Expect = 2.1
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 166 SLKICSLTSSAVSFNQVGTLRRYGSA-DWDIPLPGACIRPILAAFYY 29
S+ I +TS+ ++ G LRRYG DWD L G IL++F+Y
Sbjct: 60 SIAIVKMTSNRTMTDEHGELRRYGQEFDWDTKLQGL----ILSSFFY 102
>UniRef50_Q6CWX5 Cluster: Similar to sp|Q9C2M3 Neurospora crassa
Related to kinesin-like protein KIF1C; n=1;
Kluyveromyces lactis|Rep: Similar to sp|Q9C2M3
Neurospora crassa Related to kinesin-like protein KIF1C
- Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 456
Score = 33.9 bits (74), Expect = 2.1
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Frame = +3
Query: 81 SQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKI 260
S+ +PYR S+ TW+ +KE + K + + L +S ++ +R+ T K
Sbjct: 258 SKHLIPYRDSLLTWV------LKENLGGNSKTCMIACISPIDLEES--LSTLRYATTAKE 309
Query: 261 LRIMKAMG-LAPDLPEDLYYLIKKAVAMRKHLERNRKDKDS 380
+++ M + P++ ED+ ++ A + RK LE + + S
Sbjct: 310 IKLRATMNEIVPNINEDMKAAVEAAASSRKELEMLKSEMSS 350
>UniRef50_Q6D8R0 Cluster: Putative membrane protein; n=1;
Pectobacterium atrosepticum|Rep: Putative membrane
protein - Erwinia carotovora subsp. atroseptica
(Pectobacterium atrosepticum)
Length = 458
Score = 33.1 bits (72), Expect = 3.7
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 349 CFLMATAFL-IR*YKSSGRSGARPIAFMIRRIFLPVTNLTCAT 224
CF +AT ++ + K S R+GA +AF I +FL LT AT
Sbjct: 173 CFFLATKYIPVATTKESSRTGAYEVAFPILMLFLVAFMLTTAT 215
>UniRef50_A5V7X6 Cluster: TonB-dependent receptor precursor; n=1;
Sphingomonas wittichii RW1|Rep: TonB-dependent receptor
precursor - Sphingomonas wittichii RW1
Length = 818
Score = 33.1 bits (72), Expect = 3.7
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 69 GKGISQS-ALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVR 239
G+G++ + YR + PTW + K IF L GL + RD++G+ +R
Sbjct: 708 GEGLNLTFRADYRITGPTWFSTVQNQTKRSIFDLFFPGLGTGEYAKSRRDAYGILDLR 765
>UniRef50_Q58MZ4 Cluster: T4-like baseplate tail tube cap; n=1;
Cyanophage P-SSM2|Rep: T4-like baseplate tail tube cap -
Cyanophage P-SSM2
Length = 386
Score = 33.1 bits (72), Expect = 3.7
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 178 PFLPSLKICSLTSSAVSFNQVGTLRRYGSADWD 80
PFL S K C+LTS +V++ GT YG+ D
Sbjct: 322 PFLNSFKPCALTSFSVNYTGAGTYASYGTGGDD 354
>UniRef50_A2QE31 Cluster: Remark: alternate name for S. cerevisiae
MRPS28: YDR337w. precursor; n=1; Aspergillus niger|Rep:
Remark: alternate name for S. cerevisiae MRPS28:
YDR337w. precursor - Aspergillus niger
Length = 280
Score = 33.1 bits (72), Expect = 3.7
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 318 LIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 467
L K + + +HL+ +KD+ +K L L+ + +L RY + K P W+
Sbjct: 212 LTAKIMNLSRHLQTTKKDRHNKRNLRLLVHKRQKLLRYLRRKERGGPRWQ 261
>UniRef50_Q3A384 Cluster: Predicted PTS family phosphotransferase,
mannose-specific enzyme IIC; n=1; Pelobacter
carbinolicus DSM 2380|Rep: Predicted PTS family
phosphotransferase, mannose-specific enzyme IIC -
Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
Length = 232
Score = 32.7 bits (71), Expect = 4.8
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 20 IGDIIKSRQYGSYART-WQGYIPVGAAVPP 106
+GD+ Q G++ W G IP+GAA+PP
Sbjct: 43 MGDVATGLQIGAFLELLWLGRIPIGAAIPP 72
>UniRef50_Q5P8U4 Cluster: Helicase/SNF2 family domain protein; n=1;
Azoarcus sp. EbN1|Rep: Helicase/SNF2 family domain
protein - Azoarcus sp. (strain EbN1) (Aromatoleum
aromaticum (strain EbN1))
Length = 883
Score = 32.3 bits (70), Expect = 6.4
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 150 EQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVT-GKKILRIMKAMGLAPDLPEDLYYLI 323
+++ +L + G T S V LR+ H V + + +K+ IM A+G A D PEDL L+
Sbjct: 563 QRVGRLNRYGQTQSVEVVSLRNPHTVESMIWEKLEEKLGNIMLALGSAMDEPEDLLQLV 621
>UniRef50_A3VN55 Cluster: 3-dehydroquinate synthase; n=3;
Alphaproteobacteria|Rep: 3-dehydroquinate synthase -
Parvularcula bermudensis HTCC2503
Length = 371
Score = 32.3 bits (70), Expect = 6.4
Identities = 16/52 (30%), Positives = 32/52 (61%)
Frame = +3
Query: 252 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 407
K++ R++ GL P P+D+ LI A R +++++K + + RL+L+E+
Sbjct: 291 KRVERMIADSGL-PTRPQDIPGLITSAAEQRAFMQQDKKVEAGQLRLVLLEA 341
>UniRef50_A1V9P0 Cluster: ComEC/Rec2-related protein; n=2;
Desulfovibrio vulgaris subsp. vulgaris|Rep:
ComEC/Rec2-related protein - Desulfovibrio vulgaris
subsp. vulgaris (strain DP4)
Length = 979
Score = 32.3 bits (70), Expect = 6.4
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +3
Query: 60 HAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
+A G G++ +ALP S P W+ A V + + GL ++ +MLRD H V
Sbjct: 60 YAAGWGVALAALPETPSAPAWVTGKAQRVTGIVDDV--DGLPDGRLRIMLRDVHPV 113
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,485,992
Number of Sequences: 1657284
Number of extensions: 10760424
Number of successful extensions: 28684
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 27858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28675
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30110042232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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