Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L06
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   244   4e-66
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    30   0.23 
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    28   0.92 
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    27   1.2  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   1.6  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.6  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   4.9  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    25   4.9  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   8.5  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    25   8.5  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  244 bits (598), Expect = 4e-66
 Identities = 114/151 (75%), Positives = 129/151 (85%)
 Frame = +3

Query: 48  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 227
           MGRMH+ GKGI+ SALPY RS P W K  AD V EQI K  KKG++PSQIGV LRDSHG+
Sbjct: 1   MGRMHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGI 60

Query: 228 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 407
            QVRF+TG+KI+RI+KA GLAP+LPEDLY LIKKAV++RKHLERNRKDKDSKFRLIL+ES
Sbjct: 61  PQVRFITGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIES 120

Query: 408 RIHRLARYYKTKSVLPPNWKYESSTASALVA 500
           RIHRLARYY+    LPP WKYES+TASALVA
Sbjct: 121 RIHRLARYYRKVGALPPTWKYESATASALVA 151


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 20/81 (24%), Positives = 39/81 (48%)
 Frame = +3

Query: 234 VRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRI 413
           +R    KK+   +KA G      EDL +L    +   +  +  +++K    RL ++  RI
Sbjct: 623 IRINEAKKLAEELKAKGGLEVNAEDLEHLDADKLRAMQIEQVEKQNKSMNERLRVIGKRI 682

Query: 414 HRLARYYKTKSVLPPNWKYES 476
             L R Y+ +++  P W+ ++
Sbjct: 683 DHLERAYRREAI--PLWEEDA 701


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 345 KHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 446
           K+  R +K+ D ++  +LVESR+H L R+  +K+
Sbjct: 32  KYQWREQKESD-EYDYVLVESRLHELRRHRLSKN 64


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = +3

Query: 132 TADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDL--PE 305
           ++DD   Q  +     L   QIG+ L D  G A V   T     +      L  D+  PE
Sbjct: 66  SSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACT----WQFNFTFNLQDDMYAPE 121

Query: 306 DLYYLIKKAVAMRKHLE 356
            +  L K  +  +KH E
Sbjct: 122 SIELLTKSGIDFKKHQE 138


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +3

Query: 252 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 431
           KKI+ I     L      D YYL KKA  + +    N  +K+SK   I +E +  +    
Sbjct: 183 KKIIDIFDQFPLLTKKYWD-YYLFKKAFLILEDANLNSFEKNSKLEEIRIEKKSLKQYSP 241

Query: 432 YKTKSVLPPNW 464
              +  L  +W
Sbjct: 242 VNLEKYLTKSW 252


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -2

Query: 172 LPSLKICSLTSSAVSFNQVGTLRRYGSADWDIPLPGACIRPILAAFYYIADLTTTLV 2
           L S  +C+ T+S+  F Q+ +   YGS  +     G+    I    Y++ D+ ++ V
Sbjct: 275 LRSFALCNATTSSSLFRQIASYGVYGSFHFSSSESGSFANLIGTNNYFMTDVKSSSV 331


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 375 PCPSYYVPNVSSWRQPS*SGSTNLPVDQEQ 286
           P PSY+ P  S   Q   +GST L  D +Q
Sbjct: 338 PAPSYFSPGSSFGAQLCANGSTLLRADTKQ 367


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +3

Query: 249 GKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDK 374
           G+ + ++  A  +    PE+L+  +KK+ + +K   +  K K
Sbjct: 192 GRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 122 PGRDTAAVRQRRLGYTLARCVHTTHI 45
           P R T A R+R L YT ++  H+T +
Sbjct: 553 PQRATPASRERVLPYTRSQAFHSTSL 578


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = -1

Query: 296 IRSKTHSFHDTQDLFTSNKSDLCNTMRVPEHDTDLGRSKTLFAKFEDLFLNIIS 135
           ++++     D+    ++ K+ L   +   +  TDLG    L   F+DL + ++S
Sbjct: 162 VKARYKEISDSLVAVSAEKTQLSEKVEKMKRSTDLGAEAVLPLDFQDLRVALLS 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,469
Number of Sequences: 5004
Number of extensions: 44447
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)