Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L05
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...   112   2e-26
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...   108   3e-25
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    26   2.3  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    26   3.1  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    26   3.1  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   4.1  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    25   5.4  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    25   7.2  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    24   9.5  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    24   9.5  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    24   9.5  
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    24   9.5  

>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score =  112 bits (270), Expect = 2e-26
 Identities = 57/102 (55%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
 Frame = +3

Query: 45  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVSSMLRN*-KIPRCGQCKSKLRGIQPARPA 221
           M QR+T+RRRL+YNT+SN+ RI++TPG  +    ++    IPRCG     L+GI   RP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 222 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 347
           E +RL + KKTV+R YGG L    VK RIVRAFLIEEQKIVK
Sbjct: 61  EFARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score =  108 bits (260), Expect = 3e-25
 Identities = 55/102 (53%), Positives = 70/102 (68%), Gaps = 1/102 (0%)
 Frame = +3

Query: 45  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVSSMLRN*-KIPRCGQCKSKLRGIQPARPA 221
           M QR+T+RRRL+YNT+SN+ RI++TPG  +    ++    IPRCG     L+GI   RP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 222 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 347
           E +RL + +K V+R YGG L    VK RIVRAFLIEEQKIVK
Sbjct: 61  EFARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 270 HKRASLSSCGSRDENALRASRAGYRVVYSCTDHTSGSSSFLTYWIPSDLQEFV 112
           HK +  S   S D +    S AGY    SC    + + S +  W+ SD ++ V
Sbjct: 230 HKGSIFSISWSPDSSQFVTSSAGY----SCKIWDANTGSLIREWLSSDKKQLV 278


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 287 QMREAAHRQSFLDRRTEDRESPKSATGQHKVWQKGRQV 400
           Q+RE A R+     +TE ++  + A  +++ W K ++V
Sbjct: 488 QVREQARRRRLEVEKTEPKKLARPAKIKNEAWSKQKEV 525


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 403 IYLAAFLPDFMLACCAFRTFTIFCSS 326
           I+L A + +  L+CC   T  I+CSS
Sbjct: 13  IHLKAIIEEPKLSCCHCETCRIWCSS 38


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +2

Query: 227 FSSLLPQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPKSATG 367
           FSS L    + +R ++  L++     HRQ F+  RTE+  + ++A+G
Sbjct: 22  FSSTLSNPLTYSRSYKRVLARWGIRVHRQRFVSPRTEE-AAARTASG 67


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 26  KKSVLQNGAAAYIQTTFVLQHKVKPKENSTNSWRSLGIQYVK 151
           +KS++   ++A ++ T  LQ      +N  N W   G Q ++
Sbjct: 208 EKSIIPVSSSAALKATKALQDDPHNFQNYQNQWEQSGFQQLR 249


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/56 (19%), Positives = 29/56 (51%)
 Frame = +2

Query: 80  LQHKVKPKENSTNSWRSLGIQYVKKLEDPEVWSVQE*TTRYPAREARRAFSSLLPQ 247
           LQ+ VK  E+ +    +L  + +  + DP  W+ +  + ++   + +   +++LP+
Sbjct: 640 LQYLVKNDEDYSYLQEALKDEPLMDINDPNFWAYERKSCKFKNGDVKYGDTAILPE 695


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 189 YSCTDHTSGSSSFLTYWIPSDLQEFVLFSFGL 94
           Y C  + +  +SFL Y    DL+  +  SF L
Sbjct: 116 YFCLQYFTNLNSFLYYEAKVDLRMLICMSFAL 147


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 168 RCGQCKSKLRGIQPARPAERSR 233
           RC +CK   +G    RP  R R
Sbjct: 341 RCSRCKKSKKGCDRQRPCGRCR 362


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 146 VKKLEDPEV-WSVQE*TTRYPAREARRAFSSLLPQED 253
           +++L+D  V + +QE  T     +ARR F+ LL  ++
Sbjct: 218 LQQLDDETVSYDIQEQATNLSTDDARRVFTELLKDKN 254


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 323 QESSDDALLHAFVTENTSINALHCLLAVAETRTLCGPR 210
           Q++S+D++ H F + N  IN    L A+        PR
Sbjct: 79  QDASEDSINHMFESINPPINLAAFLTAMGSMLCRISPR 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,570,594
Number of Sequences: 5004
Number of extensions: 28263
Number of successful extensions: 92
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)