Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_L05
(452 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0790 - 21214282-21214369,21214455-21214564,21215478-212155... 111 3e-25
08_01_0372 + 3286861-3286939,3287220-3287299,3289041-3289150,328... 111 3e-25
09_04_0106 - 14636773-14636863,14636948-14637057,14638107-146381... 109 8e-25
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 27 5.3
01_05_0589 + 23459847-23460344,23460493-23461296 27 7.1
12_02_0690 - 22168299-22168393,22168478-22168640,22168716-221689... 27 9.3
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498... 27 9.3
03_04_0153 + 17745473-17745889,17746120-17746272,17747307-177475... 27 9.3
02_02_0595 + 11968298-11968329,11969405-11969438,11970216-119703... 27 9.3
02_02_0233 + 8105765-8107840 27 9.3
>08_02_0790 -
21214282-21214369,21214455-21214564,21215478-21215557,
21215659-21215737
Length = 118
Score = 111 bits (266), Expect = 3e-25
Identities = 59/104 (56%), Positives = 73/104 (70%), Gaps = 3/104 (2%)
Frame = +3
Query: 45 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVSSMLRN*KI-PRCGQCKSKLRGIQPARPA 221
MVQRLT+R+R SY TKSNQ R+V+TPGGRLV + P+C K++GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 222 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 347
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104
>08_01_0372 +
3286861-3286939,3287220-3287299,3289041-3289150,
3289224-3289311
Length = 118
Score = 111 bits (266), Expect = 3e-25
Identities = 59/104 (56%), Positives = 73/104 (70%), Gaps = 3/104 (2%)
Frame = +3
Query: 45 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVSSMLRN*KI-PRCGQCKSKLRGIQPARPA 221
MVQRLT+R+R SY TKSNQ R+V+TPGGRLV + P+C K++GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 222 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 347
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104
>09_04_0106 -
14636773-14636863,14636948-14637057,14638107-14638186,
14638302-14638380
Length = 119
Score = 109 bits (263), Expect = 8e-25
Identities = 58/104 (55%), Positives = 73/104 (70%), Gaps = 3/104 (2%)
Frame = +3
Query: 45 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVSSMLRN*KI-PRCGQCKSKLRGIQPARPA 221
MVQRLT+R+R SY TKSNQ R+V+TPGG+LV + P+C K++GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 222 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 347
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104
>02_01_0084 -
573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = -3
Query: 231 ENALRASRAGYRVVYSCTDHTSGSSSFLTYWIPSDLQEFVLFSFGLTLCCKTNVV 67
++AL S+A + + + + SS FL YW+PS + + L + L K++V+
Sbjct: 677 DDALVMSKARF-THHIAYERKTDSSKFLEYWVPSCISQPQLEMYCSILLSKSSVL 730
>01_05_0589 + 23459847-23460344,23460493-23461296
Length = 433
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 235 RRERSAGLAGWIPRSLLLH*PHLGIF 158
R +R + GW P+ L+L+ P +G+F
Sbjct: 286 RGDRGRTIRGWAPQVLVLNHPAVGVF 311
>12_02_0690 -
22168299-22168393,22168478-22168640,22168716-22168913,
22169080-22169240,22169341-22169828,22169954-22170012,
22170301-22170418,22170519-22170628
Length = 463
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/81 (22%), Positives = 32/81 (39%)
Frame = +3
Query: 27 KNLCYKMVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVSSMLRN*KIPRCGQCKSKLRGIQ 206
K L Y + + + ++ N R G +++ + +IP CGQ S L G Q
Sbjct: 385 KQLAYANISGIQYDHKMVNNYPVPLHRF-HCGGTSMLTDFIPKQQIPTCGQYNSALAG-Q 442
Query: 207 PARPAERSRLCYRKKTVKRVY 269
P E V++++
Sbjct: 443 PFESTENFSSFQEASNVRKIF 463
>03_05_0642 - 26346260-26346367,26347902-26348162,26348542-26349849,
26349960-26350178,26350241-26350300,26352159-26352215,
26352945-26353029,26353486-26353843,26353931-26355170
Length = 1231
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 78 SYNTKSNQRRIVRTPGGRLVSSMLRN*KIPRCGQCKSKLRGIQPARPAERS 230
S N NQ+R+V+ GG+ ++ + ++ + KL+G RP R+
Sbjct: 1123 SNNQSQNQQRLVQV-GGKQGAATQKPQRLSNARPAREKLKGDNAKRPGSRT 1172
>03_04_0153 +
17745473-17745889,17746120-17746272,17747307-17747512,
17747752-17747959
Length = 327
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +2
Query: 242 PQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPKSATGQHKVWQKGRQ 397
P ED R W +++ + A L+R E+ +S +A + ++ R+
Sbjct: 80 PSEDEAQREWEAEMARRLKEAEEMEELERTAEELQSQAAAEAPDESEEEKRE 131
>02_02_0595 +
11968298-11968329,11969405-11969438,11970216-11970317,
11970598-11970665,11970942-11970995,11971563-11971635,
11971852-11971961,11972039-11972143,11972266-11972365,
11972403-11972512,11974664-11974736,11974859-11974914,
11975006-11975132
Length = 347
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 92 VKPKENSTNSWRSLGIQYVKKLEDPEV 172
+ P+E S+ +WR+LG+Q ++ D E+
Sbjct: 241 IPPRELSSIAWRALGVQPRERQSDFEI 267
>02_02_0233 + 8105765-8107840
Length = 691
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 403 IYLAAFLPDFMLACCAFRTFTIFCSSIKKAL 311
+YL F PD ++ FT+ C I++AL
Sbjct: 529 MYLLLFQPDMLMPGTQQSLFTVACREIRRAL 559
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,699,949
Number of Sequences: 37544
Number of extensions: 202293
Number of successful extensions: 607
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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