Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_L05
(452 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CU457741-15|CAM36357.1| 110|Caenorhabditis elegans Hypothetical... 107 3e-24
Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical p... 30 0.69
Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical p... 30 0.69
U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical pr... 27 4.8
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 4.8
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 27 4.8
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 4.8
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 4.8
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 27 4.8
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 4.8
AC024817-6|AAY86298.2| 488|Caenorhabditis elegans Hypothetical ... 27 4.8
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 27 6.4
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 27 8.4
>CU457741-15|CAM36357.1| 110|Caenorhabditis elegans Hypothetical
protein C42C1.14 protein.
Length = 110
Score = 107 bits (258), Expect = 3e-24
Identities = 55/101 (54%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Frame = +3
Query: 45 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVSSMLRN*-KIPRCGQCKSKLRGIQPARPA 221
M R+T+RRRLSYNT SN++R+V+TPGGRLV ++ +IP+C KL GI PARP
Sbjct: 1 MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPKCRDTGVKLHGITPARPI 60
Query: 222 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV 344
L ++TV R YGG L VK+RI RAFL+EEQKIV
Sbjct: 61 ALRLLKRNERTVTRAYGGCLSPNAVKERITRAFLVEEQKIV 101
>Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical
protein R10E11.3b protein.
Length = 414
Score = 30.3 bits (65), Expect = 0.69
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -1
Query: 287 VTENTSINALHCLLAVAETRTLCG 216
V +NTSI+ HCL +ET TLCG
Sbjct: 219 VEQNTSIS--HCLRVFSETETLCG 240
>Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical
protein R10E11.3a protein.
Length = 426
Score = 30.3 bits (65), Expect = 0.69
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -1
Query: 287 VTENTSINALHCLLAVAETRTLCG 216
V +NTSI+ HCL +ET TLCG
Sbjct: 231 VEQNTSIS--HCLRVFSETETLCG 252
>U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical
protein F27C1.6 protein.
Length = 647
Score = 27.9 bits (59), Expect = 3.7
Identities = 19/81 (23%), Positives = 36/81 (44%)
Frame = +2
Query: 23 LKKSVLQNGAAAYIQTTFVLQHKVKPKENSTNSWRSLGIQYVKKLEDPEVWSVQE*TTRY 202
+KK+ L+ + T +L H + ++ + +SLGI ++ E E T
Sbjct: 25 VKKNRLKKASKTKTDATSLLSHLTVSRPSTNKAKQSLGIGGLESTEKTGKKRKSEATADE 84
Query: 203 PAREARRAFSSLLPQEDSEAR 265
+ + +L+P +D EAR
Sbjct: 85 TTTKKKLKSKTLIPLKDVEAR 105
>Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical
protein C04G2.8 protein.
Length = 197
Score = 27.5 bits (58), Expect = 4.8
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 66 RRRLSYNTKSNQRRIVRTPGGRLVS--SMLRN*KIPRCGQCKSKLRGIQPARPAERSR 233
RRR S ++S++R +VR+ VS S R R G+ +S R +R RSR
Sbjct: 80 RRRRSSTSRSSRRSVVRSASRGSVSRRSSSRGSVYGRTGRSRSSKRSRSRSRSRSRSR 137
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 38 LQNGAAAYIQTTFVLQHKVKPKENSTNSWRSLGIQYVKKLEDPEV 172
L + AA ++ V ++ +E +S R+ Y+K L+DPEV
Sbjct: 143 LSDEQAALVKRDQVYHELLRSEEEFVSSLRTCVDDYIKVLDDPEV 187
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 38 LQNGAAAYIQTTFVLQHKVKPKENSTNSWRSLGIQYVKKLEDPEV 172
L + AA ++ V ++ +E +S R+ Y+K L+DPEV
Sbjct: 143 LSDEQAALVKRDQVYHELLRSEEEFVSSLRTCVDDYIKVLDDPEV 187
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 38 LQNGAAAYIQTTFVLQHKVKPKENSTNSWRSLGIQYVKKLEDPEV 172
L + AA ++ V ++ +E +S R+ Y+K L+DPEV
Sbjct: 143 LSDEQAALVKRDQVYHELLRSEEEFVSSLRTCVDDYIKVLDDPEV 187
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 38 LQNGAAAYIQTTFVLQHKVKPKENSTNSWRSLGIQYVKKLEDPEV 172
L + AA ++ V ++ +E +S R+ Y+K L+DPEV
Sbjct: 143 LSDEQAALVKRDQVYHELLRSEEEFVSSLRTCVDDYIKVLDDPEV 187
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 38 LQNGAAAYIQTTFVLQHKVKPKENSTNSWRSLGIQYVKKLEDPEV 172
L + AA ++ V ++ +E +S R+ Y+K L+DPEV
Sbjct: 143 LSDEQAALVKRDQVYHELLRSEEEFVSSLRTCVDDYIKVLDDPEV 187
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 38 LQNGAAAYIQTTFVLQHKVKPKENSTNSWRSLGIQYVKKLEDPEV 172
L + AA ++ V ++ +E +S R+ Y+K L+DPEV
Sbjct: 143 LSDEQAALVKRDQVYHELLRSEEEFVSSLRTCVDDYIKVLDDPEV 187
>AC024817-6|AAY86298.2| 488|Caenorhabditis elegans Hypothetical
protein Y54G2A.42 protein.
Length = 488
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 44 NGAAAYIQTTFVLQHKVKPKENSTNSWRSLGIQYVKKLEDPEVW 175
+ A + QTT L K KE+ TN + G+ L+ E+W
Sbjct: 320 DNCAIHNQTTLKLPTKSSKKEDITNFLKDQGVAVDPSLKKDELW 363
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 27.1 bits (57), Expect = 6.4
Identities = 20/81 (24%), Positives = 36/81 (44%)
Frame = +2
Query: 152 KLEDPEVWSVQE*TTRYPAREARRAFSSLLPQEDSEARLWRCSLSQMREAAHRQSFLDRR 331
+LE P TT +R R + P E+S + S+ E+ R++F+DRR
Sbjct: 4224 ELEPPLPQEEDVETTARQSRVYRSSSQVRAPSEESIQKTEALRRSESLESNARKTFVDRR 4283
Query: 332 TEDRESPKSATGQHKVWQKGR 394
E+ + A+ + + + R
Sbjct: 4284 RENVSLSRKASVERETNMEAR 4304
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 26.6 bits (56), Expect = 8.4
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -2
Query: 370 LACCAFRTFTIFCSSIKKALTMRCFTHL*QRTPP*TRFTVFLR*QRRER 224
L+CCA ++ + C ++++ CF + RT P F +RRER
Sbjct: 142 LSCCASKS-NMECCALREEEVRACFHEILLRTRPNLNIQGFELRKRRER 189
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,877,472
Number of Sequences: 27780
Number of extensions: 166233
Number of successful extensions: 504
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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