Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L05
         (452 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.29 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.29 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   3.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   4.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   4.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.7  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   6.3  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   8.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   8.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.3  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 104 ENSTNSWRSLGIQYVKKLEDPEVWSVQE 187
           EN T ++ +LGIQ VKK +  E   ++E
Sbjct: 134 ENMTVTFANLGIQCVKKKDIEEALKIRE 161


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 104 ENSTNSWRSLGIQYVKKLEDPEVWSVQE 187
           EN T ++ +LGIQ VKK +  E   ++E
Sbjct: 134 ENMTVTFANLGIQCVKKKDIEEALKIRE 161


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 105 SFGLTLCCKTNVV 67
           +F  T+CCKT ++
Sbjct: 338 AFKQTICCKTRII 350


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 146 VKKLEDPEVW 175
           + KL DPEVW
Sbjct: 271 LSKLSDPEVW 280


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 146 VKKLEDPEVW 175
           + KL DPEVW
Sbjct: 324 LSKLSDPEVW 333


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 258  SLSSCGSRDENALRAS 211
            S+S  GSRDE++ R S
Sbjct: 1402 SISRAGSRDEDSTRDS 1417


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 99  QRRIVRTPGGRLVSSMLRN*KIPRCGQC 182
           ++ +++   GR+   +LR    P CG C
Sbjct: 54  RKHLLKDADGRVSCPVLRAYTCPICGAC 81


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 294 VKQRIVRAFLIEEQKIVKV 350
           + + I+R FLI +QK  K+
Sbjct: 73  ITRYIIRMFLISQQKTSKL 91


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 294 VKQRIVRAFLIEEQKIVKV 350
           + + I+R FLI +QK  K+
Sbjct: 56  ITRYIIRMFLISQQKTSKL 74


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 150 LTYWIPSDLQEFVLFSFGLTL 88
           LT+++PSD  E V  S  + +
Sbjct: 264 LTFYLPSDSGEKVTLSISILI 284


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 150 LTYWIPSDLQEFVLFSFGLTL 88
           LT+++PSD  E V  S  + +
Sbjct: 264 LTFYLPSDSGEKVTLSISILI 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,336
Number of Sequences: 438
Number of extensions: 2051
Number of successful extensions: 20
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)