Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_L04
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 48 1e-06
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 44 1e-05
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 38 0.001
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 37 0.003
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 32 0.055
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 31 0.097
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 28 1.2
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 27 1.6
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 27 1.6
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 26 4.8
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 25 6.3
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 25 8.4
SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces po... 25 8.4
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 25 8.4
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 47.6 bits (108), Expect = 1e-06
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +1
Query: 133 CPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTN---CSEHEGELFCKVC 288
C KC +SV + + GG WH CFKC C K LD ++ + + ++FCK+C
Sbjct: 24 CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78
Score = 42.7 bits (96), Expect = 4e-05
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 448 CPRCGGYVYAAEQMLARGRGWHKECFKCGDCLKRLD--STNCCEGPEQDIYC 597
C +C V + Q+ G+ WH +CFKC +C K+LD S + + ++ I+C
Sbjct: 24 CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFC 75
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 44.4 bits (100), Expect = 1e-05
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +1
Query: 97 STMP--FKPADNPKCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGE 270
ST P ++ C CG S+ A A G K H CFKC C + L+ EG+
Sbjct: 244 STKPVLYRGNSEKSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGK 303
Query: 271 LFCKVCHARKF 303
+C + + +F
Sbjct: 304 FYCHLDYHEQF 314
Score = 37.5 bits (83), Expect = 0.001
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 418 VIAKAPPGEGCPRCGGYVYAAEQMLARGRGWHKECFKCGDCLKRLD 555
V+ + + C CGG + A + A G+ H +CFKC C + L+
Sbjct: 248 VLYRGNSEKSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLE 293
Score = 37.5 bits (83), Expect = 0.001
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 130 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFCKVCHA 294
KC KC K + + + G ++H C+ CG C LL E C+ C A
Sbjct: 377 KCKKCRKPILGISVKGSDG-EYHSQCWTCGACNALLGDEGYFMIENTPICRPCKA 430
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 382 SVRTNGACLEPRVIAKAPPGEGCPRCGGYVYAAEQMLARGRGWHKECFKCGDC 540
S++ + + P+ + K + C CG V + + + A G +H ECF+C DC
Sbjct: 94 SLKRSDTSVFPKAVRKVSSSKICASCG-QVISGQYVRALGNIYHLECFRCHDC 145
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 133 CPKCGKSVYAAEERVA-GGLKWHKMCFKCGMCQKLLDSTN---CSEHEGELFCKVC 288
C +CG++ E ++ GG WHK CF C C K L+ ++ +G C C
Sbjct: 19 CFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSSC 74
Score = 36.3 bits (80), Expect = 0.003
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +1
Query: 421 IAKAPPGEG---CPRCGGYVYAAEQMLA-RGRGWHKECFKCGDCLKRLDSTN 564
I+K+P +G C RCG E ++ G WHK+CF C C K L+ ++
Sbjct: 7 ISKSPSSKGSTVCFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSD 58
Score = 34.3 bits (75), Expect = 0.014
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Frame = +1
Query: 127 PKCPKCGKSVYAAEERV------AGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFCKVC 288
P C C + A R+ +G +H+ CF+C C+K + +N +FC C
Sbjct: 69 PVCSSCAHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDNRTIFCNDC 128
Score = 31.1 bits (67), Expect = 0.13
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 508 WHKECFKCGDCLKRLDSTNCCEGPEQDIYC 597
+H+ECF+C DC K++ +N + + I+C
Sbjct: 97 YHRECFRCHDCRKQIIDSN-FKRDNRTIFC 125
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 32.3 bits (70), Expect = 0.055
Identities = 35/149 (23%), Positives = 51/149 (34%), Gaps = 4/149 (2%)
Frame = +1
Query: 100 TMPFKPADNPKCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFC 279
T+P P+C CG++ + A E G + C+ C Q ++ C+E + E C
Sbjct: 8 TVPQTTRPGPRCYNCGENGHQARECTKGSI-----CYNCN--QTGHKASECTEPQQEKTC 60
Query: 280 KVC----HARKFXXXXXXXXXXXXCLSMDTGDHLKADASVRTNGACLEPRVIAKAPPGEG 447
C H + C H+ D RTNG R
Sbjct: 61 YACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDC--RTNGQQSGGR-FGGHRSNMN 117
Query: 448 CPRCGGYVYAAEQMLARGRGWHKECFKCG 534
C CG Y + AR +C+ CG
Sbjct: 118 CYACGSYGHQ-----ARDCTMGVKCYSCG 141
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 31.5 bits (68), Expect = 0.097
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +1
Query: 133 CPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSE--HEGELFCKVCH 291
C CG A ++ ++ W K C CG+ + + CSE G C+ CH
Sbjct: 107 CTTCG----AIDDHISVRCPWTKKCMNCGLLGHI--AARCSEPRKRGPRVCRTCH 155
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 110 SNQQTTRSARNAGNQFTRPRSELPVGSNGTKCASNAVCARSYWIRPTAQNT 262
+N +T + N+G F +P + GSN T S+++ + +P A NT
Sbjct: 213 TNNASTSTTANSGFSFGKPATTSAPGSNTTVTPSSSITGTND-SKPAASNT 262
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -3
Query: 287 HTLQNSSPSCSEQLVESNNFWHIPHLKHIL 198
HT + PSCS Q IPH K ++
Sbjct: 253 HTFHATCPSCSHQCDTHMKLLDIPHFKEVI 282
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 373 ADASVRTNGACLEPRVIAKAPPGEGCPRCGGYVYAAEQMLARGRG 507
++AS R +E ++I + PPGE C YV A + GRG
Sbjct: 61 SEASDREEDTYIEEQIILRLPPGEDCE----YVRKAIENREVGRG 101
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -3
Query: 242 ESNNFWHIPHLKHILCHLSPP 180
E++N++ P L+H LCH +PP
Sbjct: 241 EASNYYVAP-LEHPLCHSAPP 260
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 340 CLSMDTGDHLKADASVRTNGACLEP 414
C+ +H+ ADA V ACL P
Sbjct: 93 CVDEVAAEHMSADAIVHYGRACLSP 117
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 151 SVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCS 255
SVY A+++ L+WH G+ L ST S
Sbjct: 189 SVYEAQQKRPFSLRWHTSLLSTGVALGLALSTKLS 223
>SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 228
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -3
Query: 590 MSCSGPSQQLVESSRFKQSPHLKHSLCHPL 501
+ CSG + E + + S H+KH + P+
Sbjct: 51 LGCSGQPGKFTEKAIREMSKHVKHPIIFPI 80
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 418 HGAPNKLRWSVRSHRLSDDRQCPWKGSQRHRRS 320
H A ++L + + S + D + P SQR +RS
Sbjct: 312 HSAESELAFQLTSTGIQDYQSIPTNSSQRRKRS 344
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,488,607
Number of Sequences: 5004
Number of extensions: 49576
Number of successful extensions: 149
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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