Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_L04
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 70 2e-12
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591... 66 2e-11
04_04_0611 - 26594737-26594991,26595307-26595396,26595490-265955... 66 2e-11
03_02_0476 + 8768182-8768313,8768734-8768833,8768949-8768986,876... 63 2e-10
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216... 61 6e-10
10_08_0547 - 18682357-18682683,18682971-18683060,18683279-186833... 56 3e-08
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 33 0.13
01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864... 33 0.17
01_01_1204 + 9689855-9690844 31 0.70
01_01_0178 + 1514878-1515417 31 0.92
04_04_1338 - 32741668-32741688,32741866-32742048,32742054-32742098 30 1.2
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 30 1.6
01_07_0016 - 40476014-40476333,40476598-40476740,40476945-404790... 29 2.8
11_06_0039 - 19512126-19512211,19514959-19516036 29 3.7
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 29 3.7
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 29 3.7
02_05_0341 - 28115835-28116404 29 3.7
01_06_0931 - 33139383-33139580,33139748-33139870,33142520-331428... 28 4.9
12_01_0900 - 8724339-8724380,8725263-8725376,8726491-8726559,872... 28 6.5
07_01_0933 + 7863508-7864368 28 6.5
06_03_0002 - 15280292-15281550,15282714-15282840 28 6.5
04_04_1077 - 30649968-30650183 28 6.5
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 27 8.6
08_02_1553 + 27835320-27835364,27836853-27836966,27837062-278374... 27 8.6
06_01_0079 - 633595-633985,634346-634543,634864-635036,635355-63... 27 8.6
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 69.7 bits (163), Expect = 2e-12
Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Frame = +1
Query: 130 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFCKVCHARKFXX 309
KC CG++VY EE A G +H+ CF+C C+ L +N S EG L+CK + +
Sbjct: 12 KCDSCGRTVYPVEELAADGRVYHRPCFRCTHCKATLQFSNYSSVEGVLYCKPHYDQILKS 71
Query: 310 XXXXXXXXXXCLSMDTGDHLKADASVRTNGACLEPRVIAKAPPG--EGCPRCGGYVYAAE 483
T KA+ ++NG +P + G + C C VY E
Sbjct: 72 TGSLEKSFE-----GTSKSAKAE---KSNGNKGQPNRFSSMFVGTQDKCVVCNKTVYPLE 123
Query: 484 QMLARGRGWHKECFKC--GDC 540
++ G +HK CF+C G C
Sbjct: 124 KVNLNGSSYHKSCFRCTHGGC 144
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/58 (39%), Positives = 32/58 (55%)
Frame = +1
Query: 130 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFCKVCHARKF 303
KC C K+VY E+ G +HK CF+C L +N HEG+L+CK H++ F
Sbjct: 111 KCVVCNKTVYPLEKVNLNGSSYHKSCFRCTHGGCTLSPSNNVTHEGKLYCKTHHSQLF 168
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 448 CPRCGGYVYAAEQMLARGRGWHKECFKCGDCLKRLDSTNCCEGPEQDIYC 597
C CG VY E++ A GR +H+ CF+C C L +N E +YC
Sbjct: 13 CDSCGRTVYPVEELAADGRVYHRPCFRCTHCKATLQFSN-YSSVEGVLYC 61
>02_05_0094 -
25758213-25758479,25758886-25758975,25759090-25759118,
25759208-25759307,25759411-25759545
Length = 206
Score = 66.5 bits (155), Expect = 2e-11
Identities = 43/151 (28%), Positives = 59/151 (39%), Gaps = 2/151 (1%)
Frame = +1
Query: 130 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFCKVCHARKFXX 309
KC C K+V+ + A G+ +HK CFKC C+ L N S +G L+CK + F
Sbjct: 9 KCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCKTHFEQLFKE 68
Query: 310 XXXXXXXXXXCLSMDTGDHLKADASVRTNGACLEPRVIAKAPPGEGCPRCGGYVYAAEQM 489
S K+D G A + + C C VY E++
Sbjct: 69 TGSFSKK----FSQGGKSSEKSD-----QGRAPSKLSSAFSGTQDKCAACQKTVYPLEKL 119
Query: 490 LARGRGWHKECFKC--GDCLKRLDSTNCCEG 576
G +HK CFKC G C+ S G
Sbjct: 120 TLEGESYHKSCFKCSHGGCILTTSSYAALNG 150
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +1
Query: 130 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFCKVCHARKF 303
KC C K+VY E+ G +HK CFKC +L +++ + G L+CK+ ++ F
Sbjct: 105 KCAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCILTTSSYAALNGILYCKIHFSQLF 162
>04_04_0611 -
26594737-26594991,26595307-26595396,26595490-26595515,
26595603-26595702,26595820-26595954
Length = 201
Score = 66.1 bits (154), Expect = 2e-11
Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 3/159 (1%)
Frame = +1
Query: 130 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFCKVCHARKFXX 309
KC C K+V+ + A G+ +HK CFKC C+ +L + S +G L+CK + F
Sbjct: 9 KCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKTHFEQLFKE 68
Query: 310 XXXXXXXXX-XCLSMDTGDHLKADASVRTNGACLEPRVIAKAPPGEGCPRCGGYVYAAEQ 486
C S D + +A + + C A + + C C VY E+
Sbjct: 69 TGSFSKKFAPGCRSTDK-ELARAPSKI-----C-----SAFSGTQDKCAACQKTVYPLEK 117
Query: 487 MLARGRGWHKECFKC--GDCLKRLDSTNCCEGPEQDIYC 597
+ G +HK CFKC G C+ S G +YC
Sbjct: 118 LTLEGESYHKSCFKCSHGGCILTTSSYAALNGV---LYC 153
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +1
Query: 130 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFCKVCHARKF 303
KC C K+VY E+ G +HK CFKC +L +++ + G L+CK+ + F
Sbjct: 104 KCAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLF 161
>03_02_0476 +
8768182-8768313,8768734-8768833,8768949-8768986,
8769102-8769191,8769465-8769695
Length = 196
Score = 62.9 bits (146), Expect = 2e-10
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 2/139 (1%)
Frame = +1
Query: 130 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFCKVCHARKFXX 309
KC C K+VY ++ G+ +H+ CFKC C+ L N S EG +CK H +
Sbjct: 8 KCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKP-HFEQLFK 66
Query: 310 XXXXXXXXXXCLSMDTGDHLKADASVRTNGACLEPRVIAKAPPGEGCPRCGGYVYAAEQM 489
+ + L + T R+ + E C C Y E++
Sbjct: 67 ETGSYNKSFQSPAKPASEKLTPEL---TRSPSKAARMFSGTQ--EKCATCSKTAYPLEKV 121
Query: 490 LARGRGWHKECFKC--GDC 540
G+ +HK CFKC G C
Sbjct: 122 TVEGQAYHKSCFKCSHGGC 140
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1
Query: 130 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFCK 282
KC C K+ Y E+ G +HK CFKC + +N + EG L+CK
Sbjct: 107 KCATCSKTAYPLEKVTVEGQAYHKSCFKCSHGGCAISPSNYAALEGILYCK 157
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 448 CPRCGGYVYAAEQMLARGRGWHKECFKCGDCLKRLDSTN 564
C C VY +Q+ G +H+ CFKC C L N
Sbjct: 9 CKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGN 47
>12_02_0498 +
19721038-19721178,19721376-19721472,19721576-19721619,
19722120-19722203,19722441-19722662
Length = 195
Score = 61.3 bits (142), Expect = 6e-10
Identities = 40/139 (28%), Positives = 56/139 (40%), Gaps = 2/139 (1%)
Frame = +1
Query: 130 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFCKVCHARKFXX 309
KC C K+VY ++ A +HK CF+C C+ L N + EG L+C+ + F
Sbjct: 11 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCRPHFDQLFKR 70
Query: 310 XXXXXXXXXXCLSMDTGDHLKADASVRTNGACLEPRVIAKAPPGEGCPRCGGYVYAAEQM 489
T +K + +V A A A E C C VY E++
Sbjct: 71 TGSLDKSFE-----GTPKVVKPEKTVENENAIKVSS--AFAGTREKCVGCNKTVYPIERV 123
Query: 490 LARGRGWHKECFKC--GDC 540
+HK CFKC G C
Sbjct: 124 TVNNTMYHKSCFKCCHGGC 142
Score = 48.0 bits (109), Expect = 6e-06
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +1
Query: 130 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFCKVCH 291
KC C K+VY E +HK CFKC + +N HEG+L+CK H
Sbjct: 109 KCVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHH 162
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 448 CPRCGGYVYAAEQMLARGRGWHKECFKCGDCLKRLDSTNCCEGPEQDIYC 597
C C VY +++ A R +HK CF+C C L N E +YC
Sbjct: 12 CMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLAN-YNSFEGVLYC 60
>10_08_0547 -
18682357-18682683,18682971-18683060,18683279-18683301,
18683397-18683496,18683615-18683749
Length = 224
Score = 55.6 bits (128), Expect = 3e-08
Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 2/140 (1%)
Frame = +1
Query: 130 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFCKVCHARKFXX 309
KC C K+V+ + A + +HK CF+C C+ L + S +G L+CK H +
Sbjct: 9 KCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKT-HFEQLFK 67
Query: 310 XXXXXXXXXXCLSMDTGDHLKADASVRTNGACLEPRVIAKAPPGEGCPRCGGYVYAAEQM 489
+ + K + + + + + C C VY E+M
Sbjct: 68 ETGTFKKNFPSGTKANSEQAKIPSKLSSVFCGTQDK----------CTACKKTVYPLEKM 117
Query: 490 LARGRGWHKECFKC--GDCL 543
G +H+ CFKC G CL
Sbjct: 118 TMEGECYHRTCFKCAHGGCL 137
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +1
Query: 130 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFCK 282
KC C K+VY E+ G +H+ CFKC LL + + + H G L+C+
Sbjct: 103 KCTACKKTVYPLEKMTMEGECYHRTCFKCAHGGCLLTNASYASHNGILYCQ 153
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 33.5 bits (73), Expect = 0.13
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 193 WHKMCFKCGMCQKLLDSTNCSEHEGELFCKVCH 291
WH CF+C C K + + HE + + K C+
Sbjct: 277 WHPQCFRCFACNKPISEYEFAMHEDQPYHKSCY 309
>01_06_0801 -
32085110-32085274,32086318-32086365,32086441-32086483,
32086588-32086651,32086740-32086792,32086899-32086937,
32087031-32087113,32087200-32087280
Length = 191
Score = 33.1 bits (72), Expect = 0.17
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 109 FKPADNP-KCPKCGK-SVYAAEERVAGGL-KWHKMCFKCGMCQKLLDSTNCSEHEGE 270
+KP P KC KCGK +V A V K +C KC C K L + SE E E
Sbjct: 59 YKPIVEPAKCQKCGKRNVRQAYHNVCTACSKDLGICAKCCTCVKALVGRDLSEQESE 115
>01_01_1204 + 9689855-9690844
Length = 329
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 163 AEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFCKVCHA 294
AEE AGGL + C MC + + +E E E+ C CH+
Sbjct: 2 AEEAAAGGL------YYCHMCASTVSAVAAAEGEVEIKCPYCHS 39
>01_01_0178 + 1514878-1515417
Length = 179
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 140 NAGNQFTRPRSELPVGSNGTKCASNAVCARSYWIRPTAQNTKVNCSAKCATHVNLDQK 313
N G + T E V S KC +AVC RS + Q+ +CS C V ++ +
Sbjct: 99 NPGPKCTGGGGEEAVRSRPWKCCDDAVCTRSMPPTCSCQDKVKSCSGGCGKCVQVESQ 156
>04_04_1338 - 32741668-32741688,32741866-32742048,32742054-32742098
Length = 82
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 120 RQPEVPEM--REISLRGRGASCRWAQMAQNVLQMRYVPEVIGFDQLLR 257
RQ E P+ RE + RG G CRW + +NVL+ + G QLLR
Sbjct: 16 RQREGPDSCGRECAERGEGF-CRWIAVVENVLKEVKISADGGCGQLLR 62
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/57 (22%), Positives = 20/57 (35%)
Frame = +1
Query: 133 CPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFCKVCHARKF 303
C C + G WH CF+C C + + S + K C+ +F
Sbjct: 558 CAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKERF 614
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = +1
Query: 448 CPRCGGYVYAAEQMLARGRGWHKECFKCGDC 540
C C + + G WH ECF+C C
Sbjct: 558 CAGCHSEIGHGRFLSCMGAVWHPECFRCHAC 588
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Frame = +1
Query: 130 KCPKCGKSVYAAEERVAGGLKWHKMCF------KCGMCQKLL 237
+C C + +Y E ++G +HK C+ KC +C++ +
Sbjct: 584 RCHACNQPIYDYEFSMSGNHPYHKTCYKERFHPKCDVCKQFI 625
>01_07_0016 -
40476014-40476333,40476598-40476740,40476945-40479099,
40479205-40480047,40480176-40480269,40480356-40481207,
40481367-40481437,40481750-40481821,40481977-40482019
Length = 1530
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 128 RSARNAGNQFTRPRSELPVGSNGT--KCASNAV 220
R+ N+ FTRP S P+G+ T KCAS+AV
Sbjct: 260 RANPNSIPSFTRPSSAGPIGAPATHGKCASSAV 292
>11_06_0039 - 19512126-19512211,19514959-19516036
Length = 387
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 370 SDDRQCPWKGSQRH-RRSHSLLVQIYVRGTLCRTVHLRVLSSWSNP 236
SDD + G+++ + S+L+QI V T ++L +W+NP
Sbjct: 14 SDDSRTQANGNEKSINETSSVLIQIVVNQTNMLATAFQLLQNWNNP 59
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 340 CLSMDTGDHLKA-DASVRT-NGACLEPRVIAKAPPGE-GCPRC 459
C+ D G +L D+ RT + CL P + +APPG CPRC
Sbjct: 35 CVECDLGGNLLCCDSCPRTYHLECLNPP-LKRAPPGNWQCPRC 76
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/46 (23%), Positives = 18/46 (39%)
Frame = +1
Query: 403 CLEPRVIAKAPPGEGCPRCGGYVYAAEQMLARGRGWHKECFKCGDC 540
C + A++ C C + + G WH +CF+C C
Sbjct: 99 CAPSQTQARSRGYRVCGGCKHEIGHGHYLSCLGMYWHPQCFRCSSC 144
Score = 27.9 bits (59), Expect = 6.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 184 GLKWHKMCFKCGMCQ 228
G+ WH CF+C C+
Sbjct: 131 GMYWHPQCFRCSSCR 145
>02_05_0341 - 28115835-28116404
Length = 189
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 400 ACLEPRVIAKAPPGEGCPRCG 462
+C V A+ PPGE C RCG
Sbjct: 140 SCRRVLVAAEMPPGERCGRCG 160
>01_06_0931 -
33139383-33139580,33139748-33139870,33142520-33142891,
33143380-33143450,33143769-33143810,33143895-33143967,
33144518-33144679,33144778-33144878,33144992-33145114,
33145296-33145689
Length = 552
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 358 GDHLKADASVRTNGACLEPRVIAKAPPG 441
GDH +A A VR NGA E + PPG
Sbjct: 2 GDH-RATAKVRVNGAPAEATLFCTDPPG 28
>12_01_0900 -
8724339-8724380,8725263-8725376,8726491-8726559,
8726665-8726824,8726905-8726961,8728080-8728258,
8728332-8728442,8728512-8728535,8729993-8730107,
8730665-8730720,8731595-8731807
Length = 379
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 457 CGGYVYAAEQMLARGRGWH 513
CGG V+ EQML G WH
Sbjct: 299 CGG-VFIQEQMLVNGHAWH 316
>07_01_0933 + 7863508-7864368
Length = 286
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 102 NAFQTSRQPEVPEMREISLRGRGASCRWAQMAQNVLQMRYV 224
N+ Q S Q +P+ E + RGRG WA Q+VL+ R V
Sbjct: 139 NSVQGSEQTCLPDGFEEATRGRGMVVSWAPQ-QDVLKHRAV 178
>06_03_0002 - 15280292-15281550,15282714-15282840
Length = 461
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 415 RVIAKAPPGEGCPRCGGYVYAAEQMLARGRGWHK 516
+VI +P GEGCP +Q ++RGR H+
Sbjct: 35 KVIVISPTGEGCPSHSLIGDRPKQTVSRGRNPHR 68
>04_04_1077 - 30649968-30650183
Length = 71
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Frame = +1
Query: 409 EPRVIAKAPPGEGCPRCGGYVYAAEQMLARGRGWHKECFK------CGDCLKRL 552
E RV+ CPRCGG V A + R C K C CL+RL
Sbjct: 13 EERVVGTHKAPGACPRCGGAVVATDVESERRILCLPLCVKSKRKYSCSRCLRRL 66
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 130 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNC 252
K P C + YA GL ++C KCG +LL + C
Sbjct: 570 KLPFCTQDQYA--NGTVEGLSEQELCIKCGKDGQLLKCSGC 608
>08_02_1553 +
27835320-27835364,27836853-27836966,27837062-27837457,
27837751-27837822,27837957-27838082,27838164-27838244,
27838364-27838558,27839018-27840013
Length = 674
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 223 CQKLLDSTNCSEHEGELFCKVCHA 294
C+ L+DS + ++ E LFC +C+A
Sbjct: 161 CRTLVDSEHQADGEDALFCTLCNA 184
>06_01_0079 -
633595-633985,634346-634543,634864-635036,635355-635599,
635683-635860,636291-636473,636769-636873,637709-637846,
637933-638925
Length = 867
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 72 LDEQDKLSE---HNAFQTSRQPEVPEMREISLRGRGASCRWAQMAQNVLQMRYVPEVIGF 242
LD++ +SE N S+ ++ +S +G C+W +M ++V + + + +
Sbjct: 649 LDDRSPMSEMYTDNHEPHSQTLNKYQLIRVSAKGMNEGCKWVEMFEDVSMVIFSVALSDY 708
Query: 243 DQL 251
DQL
Sbjct: 709 DQL 711
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,985,816
Number of Sequences: 37544
Number of extensions: 393770
Number of successful extensions: 1281
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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