Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L02
         (486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541...   103   1e-22
11_06_0031 + 19425011-19425113,19425552-19425637,19425732-194258...    61   5e-10
11_01_0269 + 2034302-2034691                                           30   1.1  
08_02_1105 + 24344656-24345513,24346774-24347149,24348089-24348204     27   6.0  

>02_02_0464 -
           10552347-10552466,10552683-10552928,10553866-10554135,
           10554231-10554413,10554493-10554688,10554775-10555079,
           10555515-10555604,10555689-10555806,10555991-10556088,
           10556187-10556272,10557622-10557736
          Length = 608

 Score =  103 bits (246), Expect = 1e-22
 Identities = 45/75 (60%), Positives = 59/75 (78%)
 Frame = -3

Query: 484 MATYLADRVIVFEGTPSSNATAHAPQSLLNGMNKFLELLGITFRRDPNNFRPRINKHASV 305
           MATYLAD+V+VFEG PS +  A+AP+ L +GMN+FL  L +TFR+DP  +RPRINK  S+
Sbjct: 533 MATYLADKVVVFEGKPSVDCIANAPEPLASGMNRFLSHLDVTFRKDPTTYRPRINKLGSI 592

Query: 304 KDMEQKRSGQYFFLE 260
           KD EQK +G Y++LE
Sbjct: 593 KDAEQKAAGCYYYLE 607



 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 475 YLADRVIVFEGTPSSNATAHAPQSLLNGMNKFLE 374
           YL+D +    GTP +      P S+  G+N FL+
Sbjct: 285 YLSDYICCLYGTPGAYGVVTLPSSVREGINIFLD 318


>11_06_0031 +
           19425011-19425113,19425552-19425637,19425732-19425829,
           19425950-19426067,19426200-19426289,19426770-19427074,
           19427162-19427357,19427435-19427617,19427713-19427982,
           19428906-19429151,19429633-19429704,19430087-19430104
          Length = 594

 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 28/39 (71%), Positives = 34/39 (87%)
 Frame = -3

Query: 484 MATYLADRVIVFEGTPSSNATAHAPQSLLNGMNKFLELL 368
           MATYLAD+VIV+EG PS + TA+APQSL++GMNKFL  L
Sbjct: 529 MATYLADKVIVYEGRPSIDCTANAPQSLVSGMNKFLSNL 567


>11_01_0269 + 2034302-2034691
          Length = 129

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 445 GTPSSNATAHAPQSLL-NGMNKFLELLGITFRRDPNNFRPR 326
           G  S +ATA   ++++ N +NK L+ +G+ F   P N RP+
Sbjct: 77  GNGSGSATALTLKNMIANLINKLLQEVGVQFYAPPTNVRPQ 117


>08_02_1105 + 24344656-24345513,24346774-24347149,24348089-24348204
          Length = 449

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 292 APCP*QRRVCLSSVGSCWDPAG 357
           AP P  RRV   +  SCW PAG
Sbjct: 194 APSPSWRRVAAPAGSSCWLPAG 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,450,070
Number of Sequences: 37544
Number of extensions: 253935
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)