Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L02
         (486 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    26   0.79 
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    25   1.4  
AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein p...    24   3.2  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    23   7.3  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    23   7.3  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   7.3  

>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 25.8 bits (54), Expect = 0.79
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -3

Query: 445 GTPSSNATAHAPQSLLNGMNKFLELLGITFRRDPNNFRPRINKHASVKDMEQKRSGQYFF 266
           G P   ++++ P  +L+ + K LE L +           R+N+H   +D  Q    QY F
Sbjct: 556 GKPPGESSSYRPLCMLDALGKVLERLILN----------RLNRHIEQQDSPQLSDAQYGF 605


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 445 GTPSSNATAHAPQSLLNGMNKFLELL 368
           G P   +++  P  +LNG+ K LE L
Sbjct: 501 GKPPGESSSFRPLGMLNGLGKVLERL 526


>AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein
           protein.
          Length = 353

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 306 LRTWSKNGLVNISSSKTNVAKCNNN 232
           LR  S + L +ISSS  N + CNN+
Sbjct: 33  LRGNSGSPLSSISSSSRNSSSCNNS 57


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 314 VFVYPRSEVVGIPP 355
           V +YP  EV+ +PP
Sbjct: 131 VLIYPNGEVLWVPP 144


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 151 YSNTFNWKYTNGEPRRHRD*YNK 219
           Y+     K   GEP RH + YNK
Sbjct: 203 YAGIPGTKGEKGEPARHPENYNK 225


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 245  NVTIMYLYILLYQSRWRRGSPF 180
            NV  M+L  ++   RW  GSPF
Sbjct: 1366 NVQRMWLATVVPCDRWLTGSPF 1387


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 486,882
Number of Sequences: 2352
Number of extensions: 10215
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 42708759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)