Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L02
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical ...   115   2e-26
AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine re...    29   1.4  
U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical p...    27   5.5  
Z68760-14|CAA92998.2|  908|Caenorhabditis elegans Hypothetical p...    27   7.2  
Z68748-13|CAA92957.2|  908|Caenorhabditis elegans Hypothetical p...    27   7.2  
U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta...    27   9.5  

>AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical
           protein Y39E4B.1 protein.
          Length = 610

 Score =  115 bits (276), Expect = 2e-26
 Identities = 53/76 (69%), Positives = 63/76 (82%)
 Frame = -3

Query: 484 MATYLADRVIVFEGTPSSNATAHAPQSLLNGMNKFLELLGITFRRDPNNFRPRINKHASV 305
           MATYLADRV+VFEG PS   TA  PQSLL GMN+FL++L ITFRRD   +RPRINK  SV
Sbjct: 534 MATYLADRVVVFEGQPSVKCTACKPQSLLEGMNRFLKMLDITFRRDQETYRPRINKLDSV 593

Query: 304 KDMEQKRSGQYFFLED 257
           KD++QK+SGQ+FFL+D
Sbjct: 594 KDVDQKKSGQFFFLDD 609


>AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine
           receptor, class x protein6 protein.
          Length = 293

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 288 NGLVNISSSKTNVAKCNNNVFIYFIVSVTMAAGFAICV-FPIKCITII 148
           NG V I+ +K N+      +FI FI+ +T+ +  A C+ + + C  +I
Sbjct: 92  NGFVVITLNKNNIFTFQRTIFI-FIILITLTSFSAACIQYFLPCCVLI 138


>U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical
           protein K06C4.8 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -1

Query: 378 SNCWGSRSGGIPTTSDRG*TNTPLLRTWSKNGLVNISSSKT 256
           S C   R+    T S RG  NT   R+ S+NG   I + KT
Sbjct: 315 STCVTCRNTDELTVSSRGRQNTKTTRSNSQNGYTAIKNEKT 355


>Z68760-14|CAA92998.2|  908|Caenorhabditis elegans Hypothetical
           protein F36H1.6 protein.
          Length = 908

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 445 GTPSSNATAHAPQSLLNGMNKFLE 374
           G P   +TAH PQ+ L  +NK +E
Sbjct: 743 GDPLDRSTAHGPQNHLAHLNKLVE 766


>Z68748-13|CAA92957.2|  908|Caenorhabditis elegans Hypothetical
           protein F36H1.6 protein.
          Length = 908

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 445 GTPSSNATAHAPQSLLNGMNKFLE 374
           G P   +TAH PQ+ L  +NK +E
Sbjct: 743 GDPLDRSTAHGPQNHLAHLNKLVE 766


>U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical
           protein K11G12.6b protein.
          Length = 766

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 242 VTIMYLYILLYQSRWRRGSPFVYFQLNVLL 153
           +T + LY LLY++ +  G  F+Y+Q + LL
Sbjct: 244 ITYLILY-LLYRTIYEAGGVFMYYQWDALL 272


>AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta
           family protein 1 protein.
          Length = 896

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -1

Query: 306 LRTWSKNGLVN-ISSSKTNVA-KCNNNVFIYFIVSVTMAAGFAICVFPIKCITIINHVFY 133
           +R  + N L+N +  + TN + +   N+ +  +   T ++   + V  ++C+  I  ++Y
Sbjct: 196 VRFAATNALLNSLEFTNTNFSNEAERNIIMQVVCESTSSSDQRVKVAALQCLVRIMQLYY 255

Query: 132 NHQLIF 115
            H L +
Sbjct: 256 EHMLSY 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,748,772
Number of Sequences: 27780
Number of extensions: 230290
Number of successful extensions: 626
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)