Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_L01
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 136 3e-33
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 89 5e-19
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 86 3e-18
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 82 7e-17
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 74 2e-14
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 65 9e-12
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 31 0.10
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 29 0.55
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro... 28 0.96
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 27 1.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.2
SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc... 27 2.9
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa... 27 2.9
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 26 5.1
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 26 5.1
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom... 22 7.5
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 25 9.0
SPCC1442.15c |cox18||mitochondrial inner membrane protein Cox18|... 25 9.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 136 bits (328), Expect = 3e-33
Identities = 73/151 (48%), Positives = 95/151 (62%), Gaps = 9/151 (5%)
Frame = +1
Query: 25 TIANAGVHATLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFVMLDIADA 204
TIA AG+H +LNARCSV+AAANP+YG+YD K P +NI L DS+LSRFDLLF++ D D
Sbjct: 443 TIAKAGIHTSLNARCSVIAAANPIYGQYDIRKDPHQNIALPDSMLSRFDLLFIVTDDIDD 502
Query: 205 DHDNMISEHVLRMHRYRNPKEHDG--------EVLPMGSL-VEMLSTENPDQVQVEESNA 357
D +SEHVLRMHRY P G VL +G+ +STEN +Q E
Sbjct: 503 KKDRALSEHVLRMHRYLPPGVEPGTPVRDSLNSVLNVGATNAAGVSTENVEQ----EVET 558
Query: 358 SIYEKYDPLLHGNTRDKRDRILSTKFMRKFI 450
++E + LLH N R K+ +L+ F+RK+I
Sbjct: 559 PVWETFSSLLHANARTKKKELLNINFVRKYI 589
Score = 54.8 bits (126), Expect = 1e-08
Identities = 28/51 (54%), Positives = 34/51 (66%)
Frame = +2
Query: 473 PKLTQEACDVIADEYARLRNQDMMDSDVARTQPVTARTLETLIRLATAHAK 625
P L Q + I + Y LRN D+ + RT P+TARTLETLIRL+TAHAK
Sbjct: 598 PILNQATAEYITNIYCGLRNDDLQGNQ-RRTSPLTARTLETLIRLSTAHAK 647
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 89.0 bits (211), Expect = 5e-19
Identities = 44/92 (47%), Positives = 61/92 (66%)
Frame = +1
Query: 25 TIANAGVHATLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFVMLDIADA 204
+IA AG+ LN+R SVLAAANP++GRYD KTP ENI Q ++LSRFD++F++ D D
Sbjct: 459 SIAKAGITTILNSRTSVLAAANPIFGRYDDMKTPGENIDFQSTILSRFDMIFIVKDEHDE 518
Query: 205 DHDNMISEHVLRMHRYRNPKEHDGEVLPMGSL 300
D I+ HV+ +H N +E E L +G +
Sbjct: 519 TKDRNIARHVINLH--TNLQE-SSETLAIGEI 547
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 86.2 bits (204), Expect = 3e-18
Identities = 41/98 (41%), Positives = 62/98 (63%)
Frame = +1
Query: 25 TIANAGVHATLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFVMLDIADA 204
+I+ AG+ TLNAR S+LAAANP+YGRY+ P+ NI L +LLSRFD+LF++LD
Sbjct: 490 SISKAGITTTLNARTSILAAANPLYGRYNPKVAPIHNINLPAALLSRFDILFLILDTPSR 549
Query: 205 DHDNMISEHVLRMHRYRNPKEHDGEVLPMGSLVEMLST 318
+ D +++HV +H + + D E L + +S+
Sbjct: 550 ETDEHLAQHVTYVHMHNEQPKMDFEPLDPNMIRHYISS 587
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 81.8 bits (193), Expect = 7e-17
Identities = 37/78 (47%), Positives = 55/78 (70%)
Frame = +1
Query: 25 TIANAGVHATLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFVMLDIADA 204
+IA AG+ ATLNAR S+LAAANP+ GRY++ T NI + ++SRFDL FV+LD +
Sbjct: 563 SIAKAGIQATLNARTSILAAANPIGGRYNRKTTLRNNINMSAPIMSRFDLFFVVLDECNE 622
Query: 205 DHDNMISEHVLRMHRYRN 258
D +++H++ +HR R+
Sbjct: 623 SVDRHLAKHIVDIHRLRD 640
Score = 39.9 bits (89), Expect = 3e-04
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = +2
Query: 458 ARLTKPKLTQEACDVIADEYARLRNQDMMDSDVARTQPVTARTLETLIRLATAHAK 625
AR KPKL E+C I +Y +LR D + + +T R LE++IRL+ A A+
Sbjct: 659 ARTFKPKLNTESCAEIVKKYKQLRMDDAQGAG-KNSYRITVRQLESMIRLSEAIAR 713
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 73.7 bits (173), Expect = 2e-14
Identities = 49/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Frame = +1
Query: 25 TIANAGVHATLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFVMLDIADA 204
T+A AG+ TLNAR S+LA+ANP+ +Y+ +NI L +LLSRFDL++++LD D
Sbjct: 632 TVAKAGIITTLNARTSILASANPIGSKYNPDLPVTKNIDLPPTLLSRFDLVYLILDRVDE 691
Query: 205 DHDNMISEHVLRMHRYRNPKEH--DGEVLPMGSLVEML--STENPDQVQVEESNASIYEK 372
D ++ H++ M+ P EH D EV + L + + N + V EE+ +
Sbjct: 692 TLDRKLANHIVSMYMEDTP-EHATDMEVFSVEFLTSYITYARNNINPVISEEAAKELVNA 750
Query: 373 YDPL--LHGNTRDKRDRILST 429
Y + L + R RI +T
Sbjct: 751 YVGMRKLGEDVRASEKRITAT 771
Score = 32.3 bits (70), Expect = 0.059
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +2
Query: 473 PKLTQEACDVIADEYARLRN--QDMMDSDVARTQPVTARTLETLIRLATAHAK 625
P +++EA + + Y +R +D+ S+ T T R LE++IRL+ AHAK
Sbjct: 737 PVISEEAAKELVNAYVGMRKLGEDVRASEKRIT--ATTRQLESMIRLSEAHAK 787
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 64.9 bits (151), Expect = 9e-12
Identities = 30/79 (37%), Positives = 50/79 (63%)
Frame = +1
Query: 25 TIANAGVHATLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFVMLDIADA 204
+I+ AG+ TL ARC+++AAANP+ GRY+ +N+ L + +LSRFD+L V+ D +
Sbjct: 621 SISKAGIVTTLQARCTIIAAANPIGGRYNTTIPFNQNVELTEPILSRFDILQVVKDTVNP 680
Query: 205 DHDNMISEHVLRMHRYRNP 261
+ D ++ V+ H +P
Sbjct: 681 EIDEQLANFVVSSHIRSHP 699
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 473 PKLTQEACDVIADEYARLRNQDMMDSDVARTQPVTARTLETLIRLATAHAK 625
P+L Q + I+ Y+ +R + + + P+T R LE+ IRL+ A AK
Sbjct: 740 PRLQQMDEEKISRLYSDMRRESLATG----SYPITVRHLESAIRLSEAFAK 786
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 31.5 bits (68), Expect = 0.10
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = -2
Query: 323 FSVESISTNEPIGNTSPSCSL-GFLYLCILRTCSDIMLSWSASAMSSITNNRSKRESSES 147
F V+ E I +T ++ GF+ L I+ C + + I + R +
Sbjct: 212 FGVKGYGEMEFIMSTIKVVAMCGFIILGIIIDCGGVPTDHRGYMGTHIFRENAFRHKFKG 271
Query: 146 WSPIFSIGVLYWSYLPYTGLAAASTEQ--RAFSVACTPAL 33
+ +F+ +S Y G+AAA TE +AF VA L
Sbjct: 272 FCAVFTSAAFSFSGTEYVGVAAAETENPAKAFPVAVRQTL 311
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 29.1 bits (62), Expect = 0.55
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = -2
Query: 272 SCSLGFLYLCILRTCSDIMLSWSASAMSSITNNRSKRESSE-SWSPIFSIGV-LYWSYLP 99
SCS+G + L S IM++ + + + + + SSE + SP F +G+ L++ +L
Sbjct: 897 SCSIGLILLYFFFIISGIMMNVATNVWLKHWSEENGKSSSELNPSPYFYLGIYLFFGFLS 956
Query: 98 YTGLAAAS 75
++++S
Sbjct: 957 CAFISSSS 964
>SPAC23H4.10c |thi4||thiamine-phosphate
dipyrophosphorylase/hydroxyethylthiazole kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 28.3 bits (60), Expect = 0.96
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +1
Query: 310 LSTENPDQVQVEESNASIYEKYDPLLHGNTRDKRDRILSTKFMRKFI 450
+ST N ++++ ++ + Y + NT+D +DR++ +RK +
Sbjct: 110 VSTNNIEEIEKAAADGADYVGIGSIYETNTKDVKDRLIGITGLRKIL 156
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 161 ESSESWSPIFSIGVLYWSYLPYTGLAAASTEQRAFSV 51
+SSE +S +F++G L YL + L+ + AFS+
Sbjct: 108 QSSEQFSTVFTLGHLGKEYLAASSLSTMTAAISAFSI 144
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3
Query: 319 PLRASQPTNPSVTLHRHAP 263
PL+ASQPTNP HAP
Sbjct: 1427 PLKASQPTNPGAP-SNHAP 1444
>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
S14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 42 GARDAERALLRAGSRQPRIRKIRPV 116
GA+ A RAL RAG R RI + P+
Sbjct: 99 GAQAALRALARAGMRIGRIEDVTPI 123
>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
S14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 42 GARDAERALLRAGSRQPRIRKIRPV 116
GA+ A RAL RAG R RI + P+
Sbjct: 99 GAQAALRALARAGMRIGRIEDVTPI 123
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.8 bits (54), Expect = 5.1
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -1
Query: 201 IGDVQHHE--QQIETGEQRVLEPYILHWCLILVVSSVYGVGGCQHGAARVQRRVHPGIG 31
+G V+H QI+TG+ VL Y W I +SS YG+ G G R G+G
Sbjct: 130 VGPVEHVRIRLQIQTGKN-VL--YHGPWDCIKKISSQYGLSGIMKGYNPTAAREAHGLG 185
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 236 RTCSDIMLSWSASAMSSITNNRSKRESSESWSPIFS 129
R S +MLS S MSS +N+ S+ S + + S
Sbjct: 16 RESSPVMLSQSFDPMSSSSNSSSEENSDDDYEKTIS 51
>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 22.2 bits (45), Expect(2) = 7.5
Identities = 9/35 (25%), Positives = 15/35 (42%)
Frame = +1
Query: 286 PMGSLVEMLSTENPDQVQVEESNASIYEKYDPLLH 390
P S+V NP+ V + + Y + +LH
Sbjct: 63 PFSSVVRNALKANPNSVSIRDITTHYYHFAEKMLH 97
Score = 21.4 bits (43), Expect(2) = 7.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +1
Query: 268 HDGEVLPMGSLVEM 309
H+G ++P GS VE+
Sbjct: 29 HEGRMVPTGSKVEL 42
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -3
Query: 610 GQPDQ-RLESARRHRLRPGDVAVHHVLVAEARVLVRDDVTGLL 485
G+ D+ +E ARR RLRP D A+ ++A +V ++ + +L
Sbjct: 352 GENDEFYVEEARRKRLRPFDKALKSFCYSDALDMVLENGSPVL 394
>SPCC1442.15c |cox18||mitochondrial inner membrane protein
Cox18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 202
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 290 IGNTSPSCSLGFLYLCILRTCSDIMLSWSASAMSSITNNRSKRE 159
I NT+ S F+ +T + + L W+ SA+ S+ N + R+
Sbjct: 157 IFNTAGIMSAFFVSFMAFKTSTALSLYWTTSAIYSLVQNVALRK 200
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 9.0
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 597 SVSRV-RAVTGCVLATSLSIMSWLRRRAYSSAMTSQASCVSLGFVSRAIV 451
SVS + + T +TSLSI S +SSA TS S +S S + +
Sbjct: 575 SVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTI 624
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,967
Number of Sequences: 5004
Number of extensions: 54951
Number of successful extensions: 198
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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