Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_L01
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              22   5.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.4  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   9.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 396  HSGQAGPDSEH*VHAQIHTR 455
            HSG  GP   H  +A  H+R
Sbjct: 1755 HSGTMGPPVGHPTNASAHSR 1774


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 132 LHWCLILVVSSVYG 91
           L+W LIL ++ VYG
Sbjct: 11  LYWYLILQIALVYG 24


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 345 GIERVDIREVRSPVAWQHS 401
           GIE V    +RSP A+ HS
Sbjct: 460 GIEEVKSPVLRSPPAFSHS 478


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 345 GIERVDIREVRSPVAWQHS 401
           GIE V    +RSP A+ HS
Sbjct: 460 GIEEVKSPVLRSPPAFSHS 478


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 191 TSPMLTTTT*YPNTSSECTDTEIP 262
           T+   TTTT  PNT+   + T  P
Sbjct: 667 TTTTTTTTTTTPNTTQNASATTPP 690


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 328 DQVQVEESNASIYEKYDPLLHGNTRDKRDR 417
           ++ Q    N + Y KY       +RD+R+R
Sbjct: 277 EREQKSYKNENSYRKYRETSKERSRDRRER 306


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 600 ISVSRVRAVTGCVLATSLSIMSW 532
           +S  +V  +TG   ATS ++  W
Sbjct: 820 LSTGKVEMITGVGKATSPNLTKW 842


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,739
Number of Sequences: 438
Number of extensions: 3948
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)