Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K24
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    44   9e-06
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    29   0.20 
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   0.82 
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   1.1  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    26   1.9  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   2.5  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   3.3  
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    25   4.4  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   4.4  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   5.8  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    24   7.6  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 43.6 bits (98), Expect = 9e-06
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = +3

Query: 9   LFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGA 185
           +FP K  +  KG+A +      T +   ++P+ Q A +  A+PITE+ KNF A+  L   
Sbjct: 125 VFPRKAGQPKKGDATDVSGAEQTDVAA-VLPITQEAVEE-AKPITEEAKNFNAFSTLSNE 182

Query: 186 RSIAKLVGIRAKRLKDAAENPD 251
           R+ A+  G RA   K  AE  +
Sbjct: 183 RAYARYAGARAAFQKKRAEEAE 204


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 29.1 bits (62), Expect = 0.20
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
 Frame = +3

Query: 114 PKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAAE----NPDDV-------- 257
           P     P  E+E      +YL   +S AK VG   ++L++A +     P+++        
Sbjct: 161 PSGAQTPAAEEENVKTLDEYLSERKSAAKPVGRTVEKLENATKVEKSAPEELFASLKKSA 220

Query: 258 TKAPTAVKETKPKK*LL 308
           ++  +A KE+KPKK LL
Sbjct: 221 SQKKSAAKESKPKKVLL 237


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 0.82
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 36  KGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDE 149
           + E N ++ +  TQ +    PV+++ PK  + P+T  E
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 153 NFKAYQYLRGARSIAKLVGIRAKRLKDAAEN 245
           N ++ ++LR A S A++VG   +R++   EN
Sbjct: 843 NNRSEEFLRNAASQAEIVGANKERIQKTVEN 873


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = +3

Query: 51  EEERKLATQLRG-PLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRL 227
           E +   +T ++G P+ PV ++A    A+    D+ N  A     G    A     RAK  
Sbjct: 305 EVKESTSTTVQGKPVKPVLKSAAS--AKSTKSDDSNLNANFARLGFGQFAAASNARAKAA 362

Query: 228 KDAAENPDDVTKAPTAVKE 284
             A E   +   APT  ++
Sbjct: 363 AKARELKKNEVNAPTYARD 381


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 75  QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 179
           Q   P+ PVQ   P   A+P  ED    +  + LR
Sbjct: 430 QPSSPVQPVQNVKPAQPAQPSLEDAAKRRVEEMLR 464


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 157 SKLINTLEELVLLPNLWA 210
           SKLI TL+E VL+  LWA
Sbjct: 254 SKLIYTLDEDVLVDALWA 271


>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 194 NRTSSSKVLISFEVLLILSDGSSNRFWCCLLYWHQGTTQLS 72
           N  +S K+L  +EVLL    G    F+  +    +GT  LS
Sbjct: 296 NECTSHKLLFPYEVLLDKDGGIVAEFYSTIALTKKGTIILS 336


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 36  KGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGAR 188
           +GE   + R  + + R     V++T P++   PI ++ KN    ++L  AR
Sbjct: 473 RGEPAVQTRNHSKRTRTATSSVEETTPRAFNVPIAQN-KNPSELEFLEHAR 522


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 61   ANWLLSCVVP*CQYNRQHQNLLLDPSLRMRRTSKL 165
            +NW +S +V  C Y+ + Q   +D   R   TS L
Sbjct: 1663 SNWAISILVFLCAYSNEQQTQAVDEIRREVLTSVL 1697


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 33  LKGEANEEERKLATQLRGPLMPVQQ 107
           L GE+N     L + +RGPL P Q+
Sbjct: 615 LYGESNPTTWGLWSMIRGPLAPYQK 639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,235,245
Number of Sequences: 5004
Number of extensions: 21260
Number of successful extensions: 91
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)