Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_K24
(345 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 52 9e-08
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 51 2e-07
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331... 28 1.7
12_01_0079 + 644754-645932,645966-646061,646193-647122 27 3.0
11_01_0078 + 609005-610183,610217-610312,610444-611373 27 3.0
02_05_0023 + 25138709-25138823,25139013-25139197,25139268-251393... 27 3.9
06_03_1379 - 29709532-29709843,29709951-29710112,29710193-297110... 27 5.2
04_03_0261 + 13586474-13587833,13591621-13591707,13591932-13591960 26 6.9
09_04_0713 - 19675437-19675551,19675872-19676017,19676226-196762... 26 9.1
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 52.4 bits (120), Expect = 9e-08
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Frame = +3
Query: 9 LFPK-GKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSV-ARPITEDEKNFKAYQYLRG 182
+FP+ +KV G++ EE ATQ++G MP+ + +SV +T+D K FKAY LR
Sbjct: 125 IFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEKRSVEVVKVTDDMKAFKAYAKLRV 184
Query: 183 ARSIAKLVGIRAKRLKDA 236
R + +G R KR +A
Sbjct: 185 ERMNQRHIGARQKRAAEA 202
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 51.2 bits (117), Expect = 2e-07
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Frame = +3
Query: 9 LFPK-GKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSV-ARPITEDEKNFKAYQYLRG 182
+FP+ +KV G++ EE ATQ++G MP+ + +SV +T++ K FKAY LR
Sbjct: 125 IFPRRARKVKAGDSTAEELATATQVQGDYMPIARGEKRSVEVVKVTDEMKAFKAYAKLRV 184
Query: 183 ARSIAKLVGIRAKRLKDA 236
R + VG R KR +A
Sbjct: 185 ERMNQRHVGARQKRAAEA 202
>11_01_0432 +
3313060-3313107,3313610-3313753,3314510-3314662,
3315283-3315792,3315888-3317423,3317505-3317573,
3317742-3317807,3318517-3318640,3319464-3319690
Length = 958
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -2
Query: 224 SLGSDAHKFGNRTSSSKVLISFEVLLILS 138
S ++HK N+T SS+ L+SF+ +L+L+
Sbjct: 575 STSVESHKQANKTESSQGLLSFQDVLLLT 603
>12_01_0079 + 644754-645932,645966-646061,646193-647122
Length = 734
Score = 27.5 bits (58), Expect = 3.0
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +3
Query: 99 VQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTKAPTAV 278
V++ K+ + + EK + + +AKLV R +RL+D ++ +K T V
Sbjct: 211 VEKAKRKAEEKRLARLEKEMLEEEERKQREEMAKLVEER-RRLRDEKAEAEERSKGATPV 269
Query: 279 KETKPKK 299
E P+K
Sbjct: 270 GEKDPRK 276
>11_01_0078 + 609005-610183,610217-610312,610444-611373
Length = 734
Score = 27.5 bits (58), Expect = 3.0
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +3
Query: 99 VQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTKAPTAV 278
V++ K+ + + EK + + +AKLV R +RL+D ++ +K T V
Sbjct: 211 VEKAKRKAEEKRLARLEKEMLEEEERKQREEMAKLVEER-RRLRDEKAEAEERSKGATPV 269
Query: 279 KETKPKK 299
E P+K
Sbjct: 270 GEKDPRK 276
>02_05_0023 +
25138709-25138823,25139013-25139197,25139268-25139335,
25139729-25140041,25140621-25140962,25140990-25141079
Length = 370
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Frame = -3
Query: 295 FGLVSFTAVGALVTSSGFSAASF---SRLARMPTSLAIE 188
FGL++ T++G L S GF++ F ++LA +P ++ +E
Sbjct: 76 FGLLNGTSIGLLNLSLGFNSIGFYQMTKLAIIPFTVMLE 114
>06_03_1379 -
29709532-29709843,29709951-29710112,29710193-29711086,
29712741-29712812,29714106-29714210,29714820-29714900
Length = 541
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 160 KLINTLEELVLLPNLWASEPSD*RMRQKILMMSLKHL 270
+++N L ++ ++W+S+ R I+ M+LKHL
Sbjct: 366 EVLNLLVDICTKQSVWSSQVHTLTARPTIMFMNLKHL 402
>04_03_0261 + 13586474-13587833,13591621-13591707,13591932-13591960
Length = 491
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +3
Query: 6 RLFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 161
R+F ++ + EERK+ T LR P VQ + + ++D +N +
Sbjct: 283 RMFANKEQAKLVRWHAEERKVDTMLRHPADSVQWRTIDRIYQEFSDDPRNMR 334
>09_04_0713 -
19675437-19675551,19675872-19676017,19676226-19676259,
19676333-19676473,19676860-19676924,19677022-19677108,
19677186-19677254,19677457-19677548,19677781-19677853,
19678129-19678205,19678490-19678684,19678804-19678861,
19679423-19679517,19680071-19680191
Length = 455
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -3
Query: 298 FFGLVSFTAVGALVTSSGFSAASFSRL-ARMPTSLAI 191
F GL V L+TS+GFS++ +R PTS ++
Sbjct: 14 FVGLALGQFVSLLITSTGFSSSELARRGVNAPTSQSL 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,004,920
Number of Sequences: 37544
Number of extensions: 137784
Number of successful extensions: 464
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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