Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K24
         (345 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...    56   9e-09
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    30   0.51 
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    30   0.51 
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    30   0.51 
AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical ...    29   0.89 
Z50794-8|CAA90655.2|  450|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z49937-9|CAO78727.1|  450|Caenorhabditis elegans Hypothetical pr...    28   1.6  
U64859-11|AAC69097.2|  337|Caenorhabditis elegans Hypothetical p...    28   1.6  
U64833-5|AAK95860.1|  402|Caenorhabditis elegans Hypothetical pr...    27   2.7  
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    27   3.6  
Z68217-1|CAA92465.1|  461|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z96048-5|CAB09422.1|  443|Caenorhabditis elegans Hypothetical pr...    26   6.3  
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr...    26   6.3  
AF273808-1|AAG15157.1|  442|Caenorhabditis elegans nuclear recep...    26   6.3  
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical...    26   6.3  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score = 55.6 bits (128), Expect = 9e-09
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
 Frame = +3

Query: 9   LFPKGKKV-LKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGA 185
           LFPK      KG+++ EE K+A QLRG ++P+  T      R +T+ E+  + ++ LR  
Sbjct: 126 LFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLRKE 185

Query: 186 RSIAKLVGIRAKRLKDAAE 242
           R+  K  G R KR ++AAE
Sbjct: 186 RADKKYRGKREKRAREAAE 204


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
            F13B9.1c protein.
          Length = 1609

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +3

Query: 9    LFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 161
            +F   K VLK     + +  A   +GPL+P  Q+AP +V   IT+  +N K
Sbjct: 880  VFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
            F13B9.1b protein.
          Length = 1614

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +3

Query: 9    LFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 161
            +F   K VLK     + +  A   +GPL+P  Q+AP +V   IT+  +N K
Sbjct: 880  VFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
            F13B9.1a protein.
          Length = 1632

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +3

Query: 9    LFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 161
            +F   K VLK     + +  A   +GPL+P  Q+AP +V   IT+  +N K
Sbjct: 902  VFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 951


>AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical
           protein Y43C5A.4 protein.
          Length = 218

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = +3

Query: 15  PKGKKVLKGEANEEERKLATQLRG-PLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARS 191
           PKGKK  K  ++ E+++   + R     PV+          + EDEK   + +    ++ 
Sbjct: 43  PKGKKKKKLSSSHEKKRSENKARNNKKKPVELDTTDEAKSTVNEDEKEKSSKRPTAKSKK 102

Query: 192 IAKLVGIRAKRLKDAAENPDDVTK 263
             K  G + K  K   + PD   K
Sbjct: 103 SKKATGSKKKNKK--TKKPDGSEK 124


>Z50794-8|CAA90655.2|  450|Caenorhabditis elegans Hypothetical
           protein F59F5.1 protein.
          Length = 450

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -2

Query: 236 RILQSLGSDAHKFGNRTSSSKVLISFEVLLILSDGSSNRFWCCLLYWHQGTTQLSSQFAL 57
           ++ + L  D H      +SS + I    +LIL + S N     +LY +QG T ++ +F L
Sbjct: 231 KVCKKLEFDLHLIACFFASSVMFIYIANILILME-SENIEDKEILYGYQGLTSIAGKFVL 289

Query: 56  FFI 48
            F+
Sbjct: 290 TFV 292


>Z49937-9|CAO78727.1|  450|Caenorhabditis elegans Hypothetical
           protein F59F5.1 protein.
          Length = 450

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -2

Query: 236 RILQSLGSDAHKFGNRTSSSKVLISFEVLLILSDGSSNRFWCCLLYWHQGTTQLSSQFAL 57
           ++ + L  D H      +SS + I    +LIL + S N     +LY +QG T ++ +F L
Sbjct: 231 KVCKKLEFDLHLIACFFASSVMFIYIANILILME-SENIEDKEILYGYQGLTSIAGKFVL 289

Query: 56  FFI 48
            F+
Sbjct: 290 TFV 292


>U64859-11|AAC69097.2|  337|Caenorhabditis elegans Hypothetical
           protein R09F10.8 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +3

Query: 48  NEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKN-FKAYQYLRGARSIAKLVGIRAKR 224
           +E+E KLAT L G +  +     +S       +EKN F   ++     S         K+
Sbjct: 184 SEDEEKLATDLLGKVQRLSDHDSESTDMEAILNEKNRFTIEEFEEKLFSAMSNRRRPIKK 243

Query: 225 LKDAAENPDDVTKAPTAVKETKPKK 299
            +   E+ DD   +    KE+ PKK
Sbjct: 244 FEREEEDQDDDEYSEVEEKESHPKK 268


>U64833-5|AAK95860.1|  402|Caenorhabditis elegans Hypothetical
           protein B0507.10 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 272 CRCFSDIIRIFCRILQSLGSDAHKFGNRTSSSKVLISFEVLLILSD 135
           CR   +  R FC    S+ +      NR  + + LI F++  +LSD
Sbjct: 225 CRNLINRHRAFCNSYNSIEAQLMNIDNRMKAGRPLIDFDMEDLLSD 270


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
            protein Y18D10A.1 protein.
          Length = 1634

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 180  GARSIAKLVGI--RAKRLKDAAENPDDVTKAPTAVKET 287
            G+    +L+ +   A R  ++AENPDDVT      K T
Sbjct: 1331 GSNECGRLIRLFCHAVRFSESAENPDDVTSPVYQKKST 1368


>Z68217-1|CAA92465.1|  461|Caenorhabditis elegans Hypothetical
           protein F58G6.1 protein.
          Length = 461

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +3

Query: 126 ARPITEDEK-NFKAYQYLRGARSIAKLVGIRA-KRLKDAAENP-DDVTKAPTAVKETKPK 296
           A P   +EK   K Y  L   ++ A    I A KR K  A NP DD     T V+E   K
Sbjct: 320 ATPTDVEEKFEAKVYPKLNAQQTAAAEQAIAAAKREKKEASNPFDDEDDESTEVEEAPKK 379

Query: 297 K 299
           K
Sbjct: 380 K 380


>Z96048-5|CAB09422.1|  443|Caenorhabditis elegans Hypothetical
           protein F57A10.5 protein.
          Length = 443

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 234 AAENPDDVTKAPTAVKETKPKK 299
           +A+ P+D   +PTAVK TKP++
Sbjct: 23  SADEPED-EPSPTAVKSTKPQR 43


>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
           translation initiationfactor eIF5B protein.
          Length = 1074

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 21  GKKVLKGEANEEE---RKLATQLRGPLMPVQQTAPKSVARP 134
           GKK  KGEA+EEE     LA+        V + AP++VA P
Sbjct: 101 GKKGKKGEADEEEDLDALLASFQEKDGPKVAEVAPEAVAAP 141


>AF273808-1|AAG15157.1|  442|Caenorhabditis elegans nuclear receptor
           NHR-60 protein.
          Length = 442

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 234 AAENPDDVTKAPTAVKETKPKK 299
           +A+ P+D   +PTAVK TKP++
Sbjct: 22  SADEPED-EPSPTAVKSTKPQR 42


>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.2 protein.
          Length = 1173

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 21  GKKVLKGEANEEE---RKLATQLRGPLMPVQQTAPKSVARP 134
           GKK  KGEA+EEE     LA+        V + AP++VA P
Sbjct: 101 GKKGKKGEADEEEDLDALLASFQEKDGPKVAEVAPEAVAAP 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,822,397
Number of Sequences: 27780
Number of extensions: 119800
Number of successful extensions: 405
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)