Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_K23
(503 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 109 2e-25
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 56 4e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 46 3e-06
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 38 9e-04
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 37 0.002
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 36 0.003
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 31 0.074
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 29 0.40
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 29 0.52
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 29 0.52
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 28 0.69
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 28 0.92
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 1.6
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo... 25 4.9
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 4.9
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 25 8.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 109 bits (262), Expect = 2e-25
Identities = 45/92 (48%), Positives = 65/92 (70%)
Frame = +3
Query: 228 NMRRPNWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEA 407
N+ + +W + +L PF KDFY H++V +RS EV +YR + E+ V G+ VP P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 408 NFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSG 503
FP+YV + +K +G++ PTPIQ Q WP+AMSG
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSG 159
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 55.6 bits (128), Expect = 4e-09
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +3
Query: 255 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHE-VTVSGVEVPNPIEHFEEANFPDYVCQ 431
++ + F KDFY + + + SP EV++ R + + + G++ P P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 432 AIKSMGYKDPTPIQAQGWPIAMSG 503
I S+GY+ PT IQAQ P SG
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSG 455
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 46.0 bits (104), Expect = 3e-06
Identities = 15/53 (28%), Positives = 33/53 (62%)
Frame = +3
Query: 339 RNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAM 497
+ + +++ G ++PNP+ ++EEA P + + +K + YK+P+ IQ P+ +
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLL 284
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 37.9 bits (84), Expect = 9e-04
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +3
Query: 354 VTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSG 503
V VSG ++ P+ F ++ Q IK GY PTP+Q PI SG
Sbjct: 158 VEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSG 206
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 36.7 bits (81), Expect = 0.002
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 396 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMS 500
F+E D +C+A + +G+K PTPIQ + P+ ++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLN 82
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 35.9 bits (79), Expect = 0.003
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +3
Query: 336 YRNKHEVTVSGVEVPN---PIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSG 503
Y KH ++ + + PI F+E + + + +K+ YK+PTPIQA WP ++G
Sbjct: 146 YIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAG 202
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 31.5 bits (68), Expect = 0.074
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 324 EVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSG 503
E ED R + V ++ + IE F + + + +AIK MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 29.1 bits (62), Expect = 0.40
Identities = 10/40 (25%), Positives = 25/40 (62%)
Frame = -1
Query: 437 YCLTHIIWKVCLFKMFNRIRYFNSTNSDFVFVSIVLYFIW 318
+ ++++I + L ++F+ +R+ N+ ++F SIV + W
Sbjct: 856 WAVSNLILAIVLIQVFDGMRFINNGYMKYIFWSIVAFTAW 895
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 28.7 bits (61), Expect = 0.52
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 396 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSG 503
FE+ + I G++ P+PIQ + PIA+SG
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSG 81
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 28.7 bits (61), Expect = 0.52
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 351 EVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQ 479
E+T S E N + FEE N + + + I + GY+ P+ +Q++
Sbjct: 10 ELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 28.3 bits (60), Expect = 0.69
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 393 HFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSG 503
+F+ + +AI G+K PTPIQ + P+ + G
Sbjct: 70 NFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEG 106
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 27.9 bits (59), Expect = 0.92
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 396 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPI 491
F+ N ++ A+ + G+K TP+QA P+
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPL 34
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +3
Query: 318 PYEVEDYRNKHEVTVSGVE-VPNPI 389
PYE++ YRNKH +S + +PN +
Sbjct: 253 PYEIQVYRNKHWFPISTEDLLPNDV 277
>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 25.4 bits (53), Expect = 4.9
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 300 SVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANF-PDYVCQAIKSMGYKD 458
S L R Y E+Y + + N +EH + F D + Q +++GY +
Sbjct: 27 SALGRRGYHSENYETSKISGKKALILENALEHVPQLGFTEDAIVQGGQALGYSN 80
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +3
Query: 297 KSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYK 455
+ D P +DYR+ +T S + N + +E + Y+CQ + S+ +
Sbjct: 919 REAFDGRPDFSKDYRSLLSITQSCNTLSNFYRNAQEKSLHAYLCQLLHSINLR 971
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 258 SLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNP 386
S+ +NKD N K RS ++ + K + S VE+ P
Sbjct: 744 SVNDYNKDETNFRKHNAKRSKTDIRSWFEKKQPIDSDVEISEP 786
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,891,946
Number of Sequences: 5004
Number of extensions: 34319
Number of successful extensions: 154
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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