Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K22
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.03c |||GCN5-related N-acetyltransferase |Schizosaccharom...    26   5.2  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    26   5.2  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    26   5.2  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   9.0  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   9.0  

>SPBC577.03c |||GCN5-related N-acetyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 317 PWTRTHVLKYYNYIRTIIETELT 385
           P+ + HVLKY+N+++     ELT
Sbjct: 18  PYQKCHVLKYHNWMKNEELQELT 40


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 159 VYSTTLWLNYYFLFFIVKWLLTLY 88
           +Y+TTL L   +  ++ KW +T Y
Sbjct: 29  IYATTLLLGSIYSIYVDKWSITSY 52


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 329 THVLKYYNYIRTIIETELTYCARIDK 406
           TH++KY +Y+  ++   L Y  R+++
Sbjct: 278 THIIKYDDYLVHLVHETLQYSVRLEQ 303


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 162 TVYSTTLWLNYYFLFFIVKW 103
           T+ S + WLN Y+  F V+W
Sbjct: 411 TLESVSSWLNAYWSMFHVRW 430


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 165 NTVYSTTLWLNYYFLFFI 112
           N V+  T WL Y FLF I
Sbjct: 24  NDVFKKTQWLLYVFLFII 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,659
Number of Sequences: 5004
Number of extensions: 43244
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)