Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K22
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0084 - 10477880-10477897,10477940-10478002,10479523-104795...    29   3.0  
08_02_1545 - 27790328-27790358,27790512-27791110,27791428-277916...    29   4.0  
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186...    29   4.0  

>10_06_0084 -
           10477880-10477897,10477940-10478002,10479523-10479575,
           10479774-10480589,10480889-10480998,10481338-10482068
          Length = 596

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -1

Query: 387 YVSSVSIIVLM*L*YFNTCVRVQGSKYTDRFVVRYGTATSMY 262
           Y+SS+ II L    + +T VR+ G   TD+ VV Y    S Y
Sbjct: 486 YLSSILIIKLACAGHSSTAVRIFGLLTTDKNVVTYTALMSAY 527


>08_02_1545 -
           27790328-27790358,27790512-27791110,27791428-27791648,
           27791852-27792071
          Length = 356

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/55 (21%), Positives = 24/55 (43%)
 Frame = -1

Query: 345 YFNTCVRVQGSKYTDRFVVRYGTATSMYCFINHVPVLNVNYIIKVFFFCYVPTPC 181
           YF   ++++G +  D+   +     S  C+      L++  ++    F Y P PC
Sbjct: 167 YFEFHLKIKGDEGVDKDFSKGLLEHSTICYTKQPMTLSLESLLSTIEFVYTPVPC 221


>04_03_0286 +
           13915705-13915984,13916478-13917062,13918188-13918661,
           13918963-13920208,13920282-13920297
          Length = 866

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = -3

Query: 520 ACVCQDNTCTDGYY---LAYVCVCVG 452
           AC+ + + C DGY+   L Y C+C G
Sbjct: 247 ACISEHSKCMDGYFAPILGYNCLCDG 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,582,255
Number of Sequences: 37544
Number of extensions: 235957
Number of successful extensions: 431
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)