Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K22
         (630 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK095631-1|BAC04594.1|  134|Homo sapiens protein ( Homo sapiens ...    34   0.36 
AK022609-1|BAB14128.1|  307|Homo sapiens protein ( Homo sapiens ...    33   0.63 
AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane hel...    33   0.83 
AK128083-1|BAC87264.1|  225|Homo sapiens protein ( Homo sapiens ...    32   1.9  
AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens ...    31   2.5  
AK123631-1|BAC85667.1|  207|Homo sapiens protein ( Homo sapiens ...    31   2.5  
AK128797-1|BAC87611.1|  201|Homo sapiens protein ( Homo sapiens ...    31   4.5  
AK126884-1|BAC86735.1|  175|Homo sapiens protein ( Homo sapiens ...    31   4.5  

>AK095631-1|BAC04594.1|  134|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38312 fis, clone FCBBF3021506. ).
          Length = 134

 Score = 34.3 bits (75), Expect = 0.36
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
 Frame = -3

Query: 523 CACVCQDNTCTDGYYLAYVCVCVGVLCACIDTVPYLKNKFVYARAICEF-CFYYCPDVIV 347
           C C+C+   C       Y+CVCV V C C+    Y++   V    +C F C + C  V V
Sbjct: 7   CVCMCRWCLCV----CIYMCVCVPV-CMCVYVCVYVR-ICVICVCVCVFVCAHMCSCVFV 60

Query: 346 IF*HVRACPRLEIY*QVC-CSLRYSDIYV 263
              +V  C  L +   VC C   Y  ++V
Sbjct: 61  ---YVCICVCLYVCVFVCVCMYVYLCVFV 86


>AK022609-1|BAB14128.1|  307|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12547 fis, clone NT2RM4000634. ).
          Length = 307

 Score = 33.5 bits (73), Expect = 0.63
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 526 VCACVCQDNTCTDGYYLAY-VCVCVGV-LCACI 434
           VCACVC    C  G +L   VC+CVG  LC C+
Sbjct: 112 VCACVC-GCLCVCGAHLCVCVCLCVGAHLCVCL 143


>AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 346

 Score = 33.1 bits (72), Expect = 0.83
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 526 VCACVCQD-NTCTDGYYLAYVCVCVGVLCACI 434
           VC C+C     C   Y   Y+CVC+ V C C+
Sbjct: 157 VCVCLCVSVYVCVSSYLCVYLCVCMYV-CECV 187



 Score = 32.3 bits (70), Expect = 1.5
 Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
 Frame = -3

Query: 529 SVCACVCQDNTCTDGYYLAYVCVCVGV-------LCACIDTVPYLKNKFVYARAICEFCF 371
           SVC CV    +    Y   YVC+CV V       +CAC+     ++     +  +C  C 
Sbjct: 104 SVCLCVYLHISV---YLCVYVCICVCVSVSLCVSVCACLSLCVCIRVSVCLSLRVC-VCV 159

Query: 370 YYCPDVIVI---F*HVRACPRLEIY*QVCCSLRYSDIYVLFYKSRSGFKCKLYNKGVLFL 200
             C  V V    +  V  C  + +   VC S+  SD   L   S   F  +L     L L
Sbjct: 160 CLCVSVYVCVSSYLCVYLCVCMYVCECVCVSVSLSDPPALVPVS-GAFSPQLCASS-LIL 217

Query: 199 LCPNTVCWVV 170
           L P++ C+++
Sbjct: 218 LLPSSWCFLL 227


>AK128083-1|BAC87264.1|  225|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46204 fis, clone TESTI4009501. ).
          Length = 225

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 324 HARTC*NITITSGQ**KQNSHIARA*TNLFFKYGTVS-MHAHNTPTHTHTYAK*YPSVHV 500
           H RT  ++   +G      +H+    T +  +  T+S MH H   TH HT+   +   H 
Sbjct: 77  HTRTHTHMHTHTGMHTLTGTHVHTPHTQMHTRILTLSHMHTH-AHTHAHTHGHTHTRAHS 135

Query: 501 LS*HTHAQTLY 533
              HTHA + Y
Sbjct: 136 THAHTHAHSHY 146


>AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46559 fis, clone THYMU3040126. ).
          Length = 303

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
 Frame = -3

Query: 517 CVCQDNTCTDGYYLAYVCVCVGVLCACIDTVPYLKNKF-VYARAICEFCFYYCPDVIVIF 341
           CVC    CT  Y   +VCVCV        T  Y+     VY R     C   C     I 
Sbjct: 108 CVC---VCTHAYIHTHVCVCV-------HTHIYIHMYVCVYTRIYTYTCVCVCTHA-YIH 156

Query: 340 *HVRACPRLEIY*QVCCSLRYSDIY 266
            HV  C    IY  +C  + Y+ IY
Sbjct: 157 THVYVCVHTHIYIHMCVCV-YTRIY 180


>AK123631-1|BAC85667.1|  207|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41637 fis, clone FEBRA1000030, weakly  similar
           to T-CELL RECEPTOR BETA CHAIN ANA 11. ).
          Length = 207

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 402 TNLFFKYGTVSMHAH-NTPTHTHTYAK*YPSVHVLS*HTHA 521
           T+    Y  +S++ H +T THTHT+A  Y   H    HTHA
Sbjct: 62  THTLSLYWLISLYIHTHTHTHTHTHAVLYLPTHT---HTHA 99


>AK128797-1|BAC87611.1|  201|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45585 fis, clone BRTHA3013882. ).
          Length = 201

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 529 SVCACVCQDNTCTDGYYLAYVCVCVGV-LCACI 434
           SVC CVC  + C        +CVCV V LC C+
Sbjct: 57  SVCLCVCLVSVC----LCVCLCVCVSVCLCVCL 85



 Score = 29.9 bits (64), Expect = 7.8
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -3

Query: 526 VCACVCQDNTCTDGYYLAYVCVCVGV---LCACIDTV 425
           VC CVC    C        +CVCV V   LC C+ +V
Sbjct: 12  VCVCVCVCVLCVSVCVCVCLCVCVCVCVCLCLCVLSV 48


>AK126884-1|BAC86735.1|  175|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44936 fis, clone BRAMY3018121. ).
          Length = 175

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 435 MHAH-NTPTHTHTYAK*YPSVHVLS-*HTHAQT 527
           MHAH +T THTHT+A     +H  +  HTH  T
Sbjct: 1   MHAHIHTCTHTHTHAHIRTCIHTCTDTHTHMHT 33


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,605,763
Number of Sequences: 237096
Number of extensions: 1432934
Number of successful extensions: 2228
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2218
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)