Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_K21
(533 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 89 4e-19
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 58 8e-10
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 50 2e-07
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 46 5e-06
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 33 0.020
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 33 0.020
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 30 0.25
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 1.8
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 3.1
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 26 3.1
SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|... 26 3.1
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 26 4.1
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 25 5.4
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 89.0 bits (211), Expect = 4e-19
Identities = 40/87 (45%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Frame = +1
Query: 43 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISR 222
RCY C GH AREC + CYNCN+TGH A C E +TCY C +GH+ R
Sbjct: 18 RCYNCGENGHQARECTKGS---ICYNCNQTGHKASECTE---PQQEKTCYACGTAGHLVR 71
Query: 223 NCPDGTK-----TCYVCGKPGHISRDC 288
+CP CY CG+ GHI+RDC
Sbjct: 72 DCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 86.2 bits (204), Expect = 3e-18
Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 13/94 (13%)
Frame = +1
Query: 46 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRN 225
CY CN TGH A EC + E +CY C GH+ R+CP CY C + GHI+R+
Sbjct: 38 CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARD 97
Query: 226 C-PDGTKT------------CYVCGKPGHISRDC 288
C +G ++ CY CG GH +RDC
Sbjct: 98 CRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDC 131
Score = 86.2 bits (204), Expect = 3e-18
Identities = 41/99 (41%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Frame = +1
Query: 31 EEADRCYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNC-----PEGGR---DNS 177
++ CY C GH+ R+C SP+ CY C + GHIAR+C GGR S
Sbjct: 55 QQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRS 114
Query: 178 NQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDCDE 294
N CY C GH +R+C G K CY CGK GH S +C +
Sbjct: 115 NMNCYACGSYGHQARDCTMGVK-CYSCGKIGHRSFECQQ 152
Score = 75.4 bits (177), Expect = 5e-15
Identities = 32/68 (47%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +1
Query: 106 PSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC--PDGTKTCYVCGKPGHIS 279
P CYNC + GH AR C +G CYNCN++GH + C P KTCY CG GH+
Sbjct: 17 PRCYNCGENGHQARECTKGS------ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLV 70
Query: 280 RDCDEERN 303
RDC N
Sbjct: 71 RDCPSSPN 78
Score = 59.3 bits (137), Expect = 4e-10
Identities = 25/61 (40%), Positives = 32/61 (52%)
Frame = +1
Query: 46 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRN 225
CY C GH AR+C CY+C K GH + C + + Q CY CN+ GHI+ N
Sbjct: 118 CYACGSYGHQARDCTMGV---KCYSCGKIGHRSFECQQA---SDGQLCYKCNQPGHIAVN 171
Query: 226 C 228
C
Sbjct: 172 C 172
Score = 50.8 bits (116), Expect = 1e-07
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +1
Query: 43 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 153
+CY C GH + EC Q+ D CY CN+ GHIA NC
Sbjct: 136 KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 58.0 bits (134), Expect = 8e-10
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Frame = +1
Query: 28 QEEADR-CYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEGGRDNSNQTCYNCN 201
Q D+ C+ C GHI ++C ++ D S C+ C H C + G C+ C+
Sbjct: 72 QRNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKG-PLKFAKCFICH 130
Query: 202 KSGHISRNCPDGTK-------TCYVCGKPGHISRDCDE 294
++GH+S C K C C H+++DCD+
Sbjct: 131 ENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
Score = 49.6 bits (113), Expect = 3e-07
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +1
Query: 79 RECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC----PDGTKT 246
R Q + C+ C + GHI ++CPE +DN + C+ C H C P
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPE-AKDNVS-ICFRCGSKEHSLNACSKKGPLKFAK 125
Query: 247 CYVCGKPGHISRDCDE 294
C++C + GH+S C++
Sbjct: 126 CFICHENGHLSGQCEQ 141
Score = 37.5 bits (83), Expect = 0.001
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 172 NSNQTCYNCNKSGHISRNCP---DGTKTCYVCGKPGHISRDCDEE 297
N ++ C+ C + GHI ++CP D C+ CG H C ++
Sbjct: 74 NRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKK 118
Score = 35.5 bits (78), Expect = 0.005
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +1
Query: 43 RCYRCNGTGHIARECAQSPD--EPS---CYNCNKTGHIARNCPEGGRDN 174
+C+ C+ GH++ +C Q+P P C C+ H+A++C + +D+
Sbjct: 125 KCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDD 173
Score = 28.3 bits (60), Expect = 0.76
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 241 KTCYVCGKPGHISRDCDEERN 303
K C+ C + GHI +DC E ++
Sbjct: 77 KFCFACRQQGHIVQDCPEAKD 97
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 50.0 bits (114), Expect = 2e-07
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 112 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNK-SGHISRNCPDGTKTCYVCGKPGHISRDC 288
C+NC GHI+++CP + C C HIS CP TK C CG GHI+ C
Sbjct: 89 CHNCKGNGHISKDCP-------HVLCTTCGAIDDHISVRCP-WTKKCMNCGLLGHIAARC 140
Query: 289 DEER 300
E R
Sbjct: 141 SEPR 144
Score = 46.4 bits (105), Expect = 3e-06
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = +1
Query: 46 CYRCNGTGHIARECAQSPDEPSCYNCNK-TGHIARNCPEGGRDNSNQTCYNCNKSGHISR 222
C+ C G GHI+++C C C HI+ CP + C NC GHI+
Sbjct: 89 CHNCKGNGHISKDC----PHVLCTTCGAIDDHISVRCP------WTKKCMNCGLLGHIAA 138
Query: 223 NCPD----GTKTCYVCGKPGHISRDC 288
C + G + C C H S C
Sbjct: 139 RCSEPRKRGPRVCRTCHTDTHTSSTC 164
Score = 36.3 bits (80), Expect = 0.003
Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Frame = +1
Query: 43 RCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHI 216
+C C GHIA C++ C C+ H + CP R Y K +
Sbjct: 126 KCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTCPLIWR-------YYVEKEHPV 178
Query: 217 SRNCPDGTKTCYVCGKPGHISRDC 288
+ + K CY C H DC
Sbjct: 179 RIDVSEVRKFCYNCASDEHFGDDC 202
Score = 35.9 bits (79), Expect = 0.004
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 163 GRDNSNQ-TCYNCNKSGHISRNCPDGTKTCYVCGK-PGHISRDC 288
G D S C+NC +GHIS++CP C CG HIS C
Sbjct: 80 GSDPSESIVCHNCKGNGHISKDCPH--VLCTTCGAIDDHISVRC 121
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/42 (30%), Positives = 16/42 (38%)
Frame = +1
Query: 112 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDG 237
CYNC H +C R N ++ C NCP G
Sbjct: 189 CYNCASDEHFGDDCTLPSRSNYPESTAFC------EANCPSG 224
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 45.6 bits (103), Expect = 5e-06
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +1
Query: 166 RDNSNQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDC 288
RD+ NQ C NC GH +CP+ C CG GHI+RDC
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC 349
Score = 45.6 bits (103), Expect = 5e-06
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 112 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCP 231
C NC GH +CPE N C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 27.1 bits (57), Expect = 1.8
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +1
Query: 142 ARNCPEGGRD-NSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDCDEERN*HAPN 318
A + PEG D NQ +G + D + C CG GH DC E N H N
Sbjct: 278 AASVPEGQNDLKRNQLRQLATLNGTLR---DDENQVCQNCGNVGHRRFDCPERIN-HTMN 333
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 46 CYRCNGTGHIARECAQSPDEP 108
C C GHIAR+C +P
Sbjct: 336 CRHCGSIGHIARDCPVRDQQP 356
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 33.5 bits (73), Expect = 0.020
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 211 HISRNCPDGTKTCYVCGKPGHISRDC 288
H + CP TCY CGK H R+C
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 7.1
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 184 TCYNCNKSGHISRNC 228
TCY C K+ H R C
Sbjct: 1805 TCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 33.5 bits (73), Expect = 0.020
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 211 HISRNCPDGTKTCYVCGKPGHISRDC 288
H + CP TCY CGK H R+C
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 7.1
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 184 TCYNCNKSGHISRNC 228
TCY C K+ H R C
Sbjct: 1805 TCYKCGKADHNLREC 1819
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 29.9 bits (64), Expect = 0.25
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +1
Query: 91 QSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCN-KSGHISRNCPDGTKTCYVCG 261
++ ++P+ N + N N TC NC ++ + R PDG C CG
Sbjct: 603 KNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACG 660
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Frame = +1
Query: 79 RECAQSPDEPS-----CYNCNKTGHIARNCPEGGRDN 174
R A PD+P CY C + GH + CP N
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACPTNADPN 205
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 187 CYNCNKSGHISRNCPDGTKTCYVCGKP 267
CY C + GH + CP Y GKP
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY-DGKP 210
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 163 GRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKP 267
GR + + C NC + GH+ N K C + G+P
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTN-----KICPLFGRP 968
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +1
Query: 91 QSPDEPSCYNCNKTGHIARN--CPEGGR 168
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Frame = +1
Query: 100 DEPSCYNCNKTGHIARNCPEGGRDN----SNQTCYNCNKSGHISR 222
++P C C H+ N P + N Y CN GH R
Sbjct: 101 NQPPCEKCGGETHMTGNGPPNEEEKWNGVRNVELYQCNVCGHNQR 145
>SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 265 PGHISRDCDEERN*HAPNNS*YFIINK 345
P H S DCDE PN++ Y I K
Sbjct: 4 PHHCSADCDEHPFESGPNDTLYSCIRK 30
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.8 bits (54), Expect = 4.1
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 516 GYRSLILHLF-CYSIAFVNFFFIQSCGRSLRPSVARFASF 400
G +L+ LF YS+ + F I SC R S A+F SF
Sbjct: 384 GKSNLVHSLFDYYSLNSIYFQMIVSCSEIDRSSFAKFQSF 423
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 5.4
Identities = 7/28 (25%), Positives = 14/28 (50%)
Frame = -2
Query: 520 AWIPFSHSASVLLFHSFCKFFFHTVMWS 437
+W+ F H ++L FC + + W+
Sbjct: 203 SWLVFRHFVDLILMCDFCSYILMGLAWT 230
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,855,279
Number of Sequences: 5004
Number of extensions: 34700
Number of successful extensions: 168
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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