Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K20
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    85   4e-18
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    44   8e-06
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    40   2e-04
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   2.9  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   3.8  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   5.0  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    24   8.8  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    24   8.8  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    24   8.8  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 84.6 bits (200), Expect = 4e-18
 Identities = 37/55 (67%), Positives = 48/55 (87%)
 Frame = +1

Query: 208 RKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVAL 372
           +KA+LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+KT   +A+
Sbjct: 146 KKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAV 200



 Score = 31.1 bits (67), Expect = 0.058
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 24  INKTTAKGLFKILEKYRPETEQSGK 98
           ++K TA  +FK+L KYRPET    K
Sbjct: 82  LDKNTATQVFKLLNKYRPETAAEKK 106


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 44.0 bits (99), Expect = 8e-06
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = +1

Query: 214 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 333
           ++ +V+A D +PIE++L LP LC    VPY  V  K+ LG
Sbjct: 48  SEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 39.5 bits (88), Expect = 2e-04
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +1

Query: 220 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVAL 372
           LV++A D+ P++++  +P LC    VPY     K  LG   + K  TS  +
Sbjct: 72  LVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVM 122


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 329 NRDLPFTIQYGTPILRQSAGRKSTSSIGS 243
           + +LPF      P++R S GRK + S+G+
Sbjct: 535 SNELPFKEIILHPLVRDSEGRKMSKSLGN 563


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +3

Query: 36  TAKGLFKILEKYR 74
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 266  SCQR-FAVRWESRTVS*RVNHDWVRLYTVRL 355
            SC++ F+  WES        H WVRL   RL
Sbjct: 2232 SCEKEFSKIWESMRYLILFKHAWVRLSVSRL 2262


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 357 ASLTVYKRTQS*FTLHDTVRDSHLTAKRWQEEHKF 253
           +S T +  + S F  HDT   S+      QE+H +
Sbjct: 617 SSSTAFHLSNSLFETHDTTGTSNFAVSIQQEKHYY 651


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 168 PTAGTNTVTKLVEKK 212
           PTAGT TVTK+   K
Sbjct: 265 PTAGTRTVTKISGSK 279



 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 168 PTAGTNTVTKLVEKK 212
           PTAGT TVTK+   K
Sbjct: 405 PTAGTRTVTKISGSK 419


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 337 AHPIVIYPSRYSTGLPSYGKALAGRAQVRLGL 242
           A+PI +  S +ST  P+YG AL        GL
Sbjct: 260 ANPIYLDDSYWSTVKPTYGLALECEGDTCSGL 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,426,133
Number of Sequences: 5004
Number of extensions: 22696
Number of successful extensions: 66
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)