Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_K20
(373 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 83 8e-17
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 83 8e-17
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 45 2e-05
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 36 0.007
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 30 0.61
Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 26 7.5
AL110487-11|CAC42369.1| 624|Caenorhabditis elegans Hypothetical... 26 7.5
AL110487-10|CAC42368.1| 623|Caenorhabditis elegans Hypothetical... 26 7.5
AL110487-9|CAB54435.1| 626|Caenorhabditis elegans Hypothetical ... 26 7.5
AL023844-10|CAA19530.3| 503|Caenorhabditis elegans Hypothetical... 26 7.5
AL023844-9|CAH04760.1| 512|Caenorhabditis elegans Hypothetical ... 26 7.5
AC006769-16|AAF60588.2| 338|Caenorhabditis elegans Serpentine r... 26 7.5
Z82076-2|CAB04938.1| 360|Caenorhabditis elegans Hypothetical pr... 26 9.9
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 82.6 bits (195), Expect = 8e-17
Identities = 37/55 (67%), Positives = 46/55 (83%)
Frame = +1
Query: 208 RKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVAL 372
R+AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +VAL
Sbjct: 151 RRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVAL 205
Score = 40.3 bits (90), Expect = 4e-04
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +3
Query: 24 INKTTAKGLFKILEKYRPETEQSGKSV*RXR-RSQGC*ER*AATEKAKHPTAGTNTVTKL 200
++ +A+ FK+L+KYRPE+ ++ K+ R R ++ ++ T++ G NT+T+L
Sbjct: 88 LDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRL 147
Query: 201 VEKK 212
VE +
Sbjct: 148 VETR 151
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 82.6 bits (195), Expect = 8e-17
Identities = 37/55 (67%), Positives = 46/55 (83%)
Frame = +1
Query: 208 RKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVAL 372
R+AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +VAL
Sbjct: 131 RRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVAL 185
Score = 27.1 bits (57), Expect = 4.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 24 INKTTAKGLFKILEKYRPETEQSGK 98
++ +A+ FK+L+KYRPE+ + K
Sbjct: 88 LDSQSARQAFKLLDKYRPESTEVTK 112
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 45.2 bits (102), Expect = 2e-05
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = +1
Query: 214 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 333
++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 51 SEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 36.3 bits (80), Expect = 0.007
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 205 RRKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-ALVHRK 351
R + + ++A +V PI++ +P +C + +PY + + +LG A+ HR+
Sbjct: 82 RNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRR 131
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 29.9 bits (64), Expect = 0.61
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +3
Query: 24 INKTTAKGLFKILEKYRPETEQSGKSV*RXR 116
++ +A+ FK+L+KYRPE+ ++ K+ R R
Sbjct: 191 LDSHSARQAFKLLDKYRPESSEAKKNRLRAR 221
>Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical
protein T20D3.8 protein.
Length = 282
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -1
Query: 349 YGVQAHPIVIYPSRYSTGLPS 287
YGV+A P+V YP+ STGL S
Sbjct: 155 YGVKA-PVVSYPTSVSTGLSS 174
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical
protein K08E7.5a protein.
Length = 1221
Score = 26.2 bits (55), Expect = 7.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 165 HPTAGTNTVTKLVEKKSTACGHRS*RRPNRTCALPASALP*DGSP 299
HP+A N +T+L++KK A S + ++ AS P +P
Sbjct: 194 HPSAPQNLLTQLIQKKKDAPNKGSSEKSSKWSDDHASGYPEGSAP 238
>AL110487-11|CAC42369.1| 624|Caenorhabditis elegans Hypothetical
protein Y39E4B.12c protein.
Length = 624
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 3 TRPVHPDINKTTAKGLFKILEKY 71
TRP+ P + T A GLF I +KY
Sbjct: 340 TRPIDPVRSPTMAGGLFSIDKKY 362
>AL110487-10|CAC42368.1| 623|Caenorhabditis elegans Hypothetical
protein Y39E4B.12b protein.
Length = 623
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 3 TRPVHPDINKTTAKGLFKILEKY 71
TRP+ P + T A GLF I +KY
Sbjct: 340 TRPIDPVRSPTMAGGLFSIDKKY 362
>AL110487-9|CAB54435.1| 626|Caenorhabditis elegans Hypothetical
protein Y39E4B.12a protein.
Length = 626
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 3 TRPVHPDINKTTAKGLFKILEKY 71
TRP+ P + T A GLF I +KY
Sbjct: 340 TRPIDPVRSPTMAGGLFSIDKKY 362
>AL023844-10|CAA19530.3| 503|Caenorhabditis elegans Hypothetical
protein Y48A6B.6a protein.
Length = 503
Score = 26.2 bits (55), Expect = 7.5
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -1
Query: 325 VIYPSRYSTGLPSYGKALAGRAQVRLGLRHER*PQAVLFFST 200
V+ RYS+GL +GK L + +LG+ V+FFST
Sbjct: 360 VLKLGRYSSGLQMFGKTLKASFR-QLGMMAMVVMTGVIFFST 400
>AL023844-9|CAH04760.1| 512|Caenorhabditis elegans Hypothetical
protein Y48A6B.6b protein.
Length = 512
Score = 26.2 bits (55), Expect = 7.5
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -1
Query: 325 VIYPSRYSTGLPSYGKALAGRAQVRLGLRHER*PQAVLFFST 200
V+ RYS+GL +GK L + +LG+ V+FFST
Sbjct: 396 VLKLGRYSSGLQMFGKTLKASFR-QLGMMAMVVMTGVIFFST 436
>AC006769-16|AAF60588.2| 338|Caenorhabditis elegans Serpentine
receptor, class j protein20 protein.
Length = 338
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 241 VDPIELVLFLPALCRKMGVPYCIVKGKS 324
+DP+ ++L LPAL R++ P +G S
Sbjct: 294 LDPLAIILLLPALRRRLPNPIRKYRGNS 321
>Z82076-2|CAB04938.1| 360|Caenorhabditis elegans Hypothetical
protein W07G1.6 protein.
Length = 360
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 219 LCFSSQ-QAW*QCWFQR*GVWPFRWRLI 139
+CFS AW +CW VWP++ L+
Sbjct: 65 ICFSFYFGAWFECWLGLVLVWPYKNGLV 92
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,965,675
Number of Sequences: 27780
Number of extensions: 131223
Number of successful extensions: 301
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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