Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K19
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0196 - 27410837-27413296                                         29   4.4  
09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287...    28   5.9  

>01_06_0196 - 27410837-27413296
          Length = 819

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 261 DNTFG-TRWFDCDNEEDQITIGYRDAPFKGCIMRAS-SGFSFVTVRTSSGRWIWSSLT 428
           DN F  + WF  D     +    RDAP  G   R S S    + +  ++G  +WSS T
Sbjct: 62  DNAFTFSVWFTADPNRTAVWSANRDAPVNGRGSRVSFSRDGELALADTNGTTVWSSKT 119


>09_04_0593 -
           18825741-18826702,18826994-18827875,18828687-18828775,
           18828942-18829080,18829405-18829531,18829629-18829838
          Length = 802

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 332 VAITNSNLILFIVTVKPASAKCII 261
           VA  N   ++ IV  KPASA CII
Sbjct: 629 VAYNNKEFLIDIVETKPASAVCII 652


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,219,056
Number of Sequences: 37544
Number of extensions: 330985
Number of successful extensions: 745
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)