Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K19
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81088-1|CAB03124.1|  364|Caenorhabditis elegans Hypothetical pr...    47   1e-05
Z66496-5|CAA91280.2|  507|Caenorhabditis elegans Hypothetical pr...    40   0.002
AF098999-3|AAC68726.2|  445|Caenorhabditis elegans Hypothetical ...    37   0.015
AC024761-6|AAF59467.3|  599|Caenorhabditis elegans Hypothetical ...    35   0.060
AC024761-5|AAU05550.1|  601|Caenorhabditis elegans Hypothetical ...    35   0.060
AL132851-1|CAB60411.1|  403|Caenorhabditis elegans Hypothetical ...    34   0.10 
Z49911-1|CAA90131.2|  647|Caenorhabditis elegans Hypothetical pr...    31   0.98 
Z49125-1|CAA88934.1|  424|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF000195-8|AAN84853.1|  400|Caenorhabditis elegans Oxysterol bin...    29   3.0  
AF000195-7|AAC24270.1|  676|Caenorhabditis elegans Oxysterol bin...    29   3.0  
Z99278-7|CAB16488.1|  382|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AC091267-1|AAK31565.1|  789|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z78542-9|CAB01742.2|  405|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.    28   6.9  
U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated p...    28   6.9  

>Z81088-1|CAB03124.1|  364|Caenorhabditis elegans Hypothetical
           protein F53F1.1 protein.
          Length = 364

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 23/57 (40%), Positives = 34/57 (59%)
 Frame = +1

Query: 490 LQVQCEKTHMRVNIEFDRPFYGMMFSKGFYSDPHCMHLKPGTGHLSATFEIFLNSCG 660
           +QV+C+   + V I+ ++PF G++F K F S+  C     GTG LSA  EI +  CG
Sbjct: 59  VQVECDSRTISVQIKTEKPFVGVIFVKDFASEEVC--TSRGTGRLSAFLEIEIGLCG 113


>Z66496-5|CAA91280.2|  507|Caenorhabditis elegans Hypothetical
           protein E04D5.3 protein.
          Length = 507

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +1

Query: 469 DSPKIKHLQVQCEKTHMRVNIEFDRPFYGMMFSKGFYSDPHCMHLKPG-TGHLSATFEIF 645
           D+  I   +V CE   + +  +    F G +F KG+ S+P CM +  G TGH    FE+ 
Sbjct: 32  DNSLIGEPEVVCETASISLLFKTRNSFNGKVFVKGYVSEPSCMTVGDGKTGH---RFEVR 88

Query: 646 LNSCGM 663
            +SCG+
Sbjct: 89  HDSCGV 94


>AF098999-3|AAC68726.2|  445|Caenorhabditis elegans Hypothetical
           protein W04C9.3 protein.
          Length = 445

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +1

Query: 469 DSPKIKHLQVQCEKTHMRVNIEFDRPFYGMMFSKGFYSDPHCMHLKPGTGHLSATFEIFL 648
           D+  I   ++QC    +  +     PF G ++ +GFY  P C            +F + L
Sbjct: 20  DNEIIGEPKLQCNPESITFSFNTRNPFIGNVYIRGFYRTPGCRRQFLAPNQAGGSFTVRL 79

Query: 649 NSCGM 663
             CGM
Sbjct: 80  GDCGM 84


>AC024761-6|AAF59467.3|  599|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.5a protein.
          Length = 599

 Score = 34.7 bits (76), Expect = 0.060
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +1

Query: 463 TPDSPKIKHLQVQCEKTHMRVNIEFDRPFYGMMFSKGFYSDPHCMH 600
           TP   +I+ +   C    +  +I+FD+PF G ++S  + +   C++
Sbjct: 21  TPQYAEIRAVSAMCSSDGITASIDFDKPFTGKIYSLNYANSNDCLY 66


>AC024761-5|AAU05550.1|  601|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.5b protein.
          Length = 601

 Score = 34.7 bits (76), Expect = 0.060
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +1

Query: 463 TPDSPKIKHLQVQCEKTHMRVNIEFDRPFYGMMFSKGFYSDPHCMH 600
           TP   +I+ +   C    +  +I+FD+PF G ++S  + +   C++
Sbjct: 21  TPQYAEIRAVSAMCSSDGITASIDFDKPFTGKIYSLNYANSNDCLY 66


>AL132851-1|CAB60411.1|  403|Caenorhabditis elegans Hypothetical
           protein Y53H1B.1 protein.
          Length = 403

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +1

Query: 493 QVQCEKTHMRVNIEFDRPFYGMMFSKGFYSDPHCMHLKPGTGHLSATFEIFLNSCGM 663
           +V C +  ++++ +  RPF+G +F KG      C+     +     TFE+   +C M
Sbjct: 32  EVDCMEDRVKLSFKTQRPFHGRIFVKGMVDKQACVRDFVTSQAKDVTFELENGACNM 88


>Z49911-1|CAA90131.2|  647|Caenorhabditis elegans Hypothetical
           protein M28.1 protein.
          Length = 647

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 469 DSPKIKHLQVQCEKTHMRVNIEFDRPFYGMMFSKGFYSDPHC 594
           D+  I    + C++  + + +  +R F G +F KG Y++P C
Sbjct: 32  DNAIIGQPYISCQRDRIVIEVITERLFTGKVFVKGDYANPQC 73


>Z49125-1|CAA88934.1|  424|Caenorhabditis elegans Hypothetical
           protein C47G2.1 protein.
          Length = 424

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +1

Query: 493 QVQCEKTHMRVNIEFDRPFYGMMFSKGFYSDPHCMHLKPGTGHLSATFEIFLNSC 657
           +V+C    + VN     PF G ++ KG Y    C       G   A  E+  +SC
Sbjct: 30  EVECGPNSITVNFNTRNPFEGHVYVKGLYDQAGCR--SDEGGRQVAGIELPFDSC 82


>AF000195-8|AAN84853.1|  400|Caenorhabditis elegans Oxysterol
           binding protein (osbp)related protein 4, isoform b
           protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +1

Query: 490 LQVQCEKTHMRVNIEF-DRPFYG 555
           ++V+CEKT  R +IEF  +PF+G
Sbjct: 242 VKVECEKTGYRADIEFLTKPFFG 264


>AF000195-7|AAC24270.1|  676|Caenorhabditis elegans Oxysterol
           binding protein (osbp)related protein 4, isoform a
           protein.
          Length = 676

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +1

Query: 490 LQVQCEKTHMRVNIEF-DRPFYG 555
           ++V+CEKT  R +IEF  +PF+G
Sbjct: 518 VKVECEKTGYRADIEFLTKPFFG 540


>Z99278-7|CAB16488.1|  382|Caenorhabditis elegans Hypothetical
           protein Y53C12B.6 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +1

Query: 493 QVQCEKTHMRVNIEFDRPFYGMMFSKGFYSDPHCMHLKPGTGHLSATFEIFLNSC 657
           +++C  T + + +E D PF G +F +G      C          + +FE   + C
Sbjct: 26  KIRCAPTGITIMLETDSPFKGALFLRGSADKKSCKANFSAQPSQNISFEFGFDDC 80


>AC091267-1|AAK31565.1|  789|Caenorhabditis elegans Hypothetical
           protein Y37B11A.1 protein.
          Length = 789

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 466 PDS-PKIKHL-QVQCEKTHMRVNIEFDRPFYGMMFSKGFYSDPHCM 597
           PD+ P+++    V+C +  M + +   R   G+M++  ++ +P CM
Sbjct: 439 PDAKPQVRGATDVKCTEHSMSIVVRTQRALQGVMYAHMYHDEPECM 484


>Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical
           protein F53B6.6 protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = +1

Query: 493 QVQCEKTHMRVNIEFDRPFYGMMFSKGFYSDPHCMHLKPGTGHLSATFEIFLNSCGM 663
           +V C    +RV +  + PF G ++  G     HC+            F I + +C M
Sbjct: 83  EVFCGIDTIRVKVNTEHPFNGRIYVDGESDKQHCVQHSADAHSSPQEFTIPIGACNM 139


>Z78542-9|CAB01742.2|  405|Caenorhabditis elegans Hypothetical
           protein F20D1.8 protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 496 VQCEKTHMRVNIEFDRPFYGMMFSKGFYSDPHC 594
           ++C    + +N +    F G ++ KG YS  HC
Sbjct: 32  IRCGSESLSINFKTQGAFEGHVYVKGHYSMKHC 64


>U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.
          Length = 777

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 339 FKGCIMRASSGFSFVTVRTSSGRWIWSSLTAC 434
           F  C   +S G  +V   +  GR++W++L  C
Sbjct: 105 FDFCARTSSHGIPYVATSSFFGRYVWAALFMC 136


>U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated
           protein 8 protein.
          Length = 777

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 339 FKGCIMRASSGFSFVTVRTSSGRWIWSSLTAC 434
           F  C   +S G  +V   +  GR++W++L  C
Sbjct: 105 FDFCARTSSHGIPYVATSSFFGRYVWAALFMC 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,057,447
Number of Sequences: 27780
Number of extensions: 306029
Number of successful extensions: 703
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)