Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K18
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    29   0.40 
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    29   0.70 
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.7  

>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +2

Query: 164 MMSDHKYDQRDVFFCIYINIGT 229
           M S++KYD++ +FF +++ +GT
Sbjct: 1   MSSEYKYDEQGIFFPVFLLVGT 22


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 544 LYLRDQSPPNTIDKRARSDELRASVGLTRA*SAPEIPTKTPRS 416
           +YL +     TID + R ++L++++ +    SA E+P   P S
Sbjct: 722 IYLLEDMGSRTIDSKVRLEKLKSAIEIFDINSATEMPINEPLS 764


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -1

Query: 440 NTH*NPPEPSAAFGMEATRGNFRKHRVAPCSEPIT*MPCFKFCFPYIYMYLCIRCY 273
           N H +  +P+ A     TRG     R+  C+EPI    C    F  I +Y+C+  Y
Sbjct: 312 NEHEHQRDPAYAIRTALTRGV----RLL-CTEPIVQAFCMYLVFINILLYICMVGY 362


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 484 LRASVGLTRA*SAPEIPTKTPRSRP 410
           L  S G   + SAP IP   P SRP
Sbjct: 217 LNESAGTPTSTSAPPIPPSIPSSRP 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,912
Number of Sequences: 5004
Number of extensions: 47320
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)