Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K18
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1225 - 27164595-27164842,27164959-27165133,27165213-271653...    30   1.2  
11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558     29   2.9  
11_02_0122 - 8531476-8531688                                           29   2.9  
02_01_0072 - 502785-504038                                             29   3.8  
02_04_0557 + 23865202-23865437,23865469-23865997                       28   6.7  
03_03_0120 - 14608688-14608936,14609249-14609638                       27   8.8  
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892...    27   8.8  

>12_02_1225 -
           27164595-27164842,27164959-27165133,27165213-27165307,
           27165391-27165444,27165794-27165868,27165961-27166081,
           27166494-27166549,27166698-27166762,27166962-27167050,
           27167155-27167812,27168182-27168202,27168777-27168859,
           27169081-27169136,27169413-27169619,27170628-27170760
          Length = 711

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 303 IWKTKLKAGHLRYGFAAGGDAV-LAKVTPCRLHPKCSG 413
           +W     A   R   AA G A+ LA++T CR H +C+G
Sbjct: 287 VWMDSSTAAQCREVEAAVGGALELARMTGCRAHERCTG 324


>11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558
          Length = 852

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 331 IYVMGSLQGATRCLRKLPRVASIPNAADGSGGF 429
           ++V+G L    +CLR L      P+AADGS GF
Sbjct: 656 LHVIGKLN---KCLRSLSVQIRSPSAADGSNGF 685


>11_02_0122 - 8531476-8531688
          Length = 70

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
 Frame = -1

Query: 362 VAPCSEP------IT*MPCFKFCFPYIYMYL 288
           VAPCS P      +   PCFKFCF   +++L
Sbjct: 17  VAPCSIPFPDCGSMCNTPCFKFCFTRCFLFL 47


>02_01_0072 - 502785-504038
          Length = 417

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 344 VRCRGRRGACESYPVSPPSQMQRTAP 421
           V C+ R  A  + PV+PP Q+Q  AP
Sbjct: 246 VPCQDRSSAATNPPVAPPKQVQWAAP 271


>02_04_0557 + 23865202-23865437,23865469-23865997
          Length = 254

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 329 ASTLWVRCRGRRGACESYPVSPPSQMQRTAPGGFS--GYFRSASRPGESH 472
           AS  + RCR RRG   S P +P  Q +R+     S     R+ +R G+ H
Sbjct: 42  ASGCFGRCRARRGEESSAP-TPGEQRRRSVAAWLSVISCIRTRARGGDDH 90


>03_03_0120 - 14608688-14608936,14609249-14609638
          Length = 212

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 329 ASTLWVRCRGRRGACESYPVSPP 397
           A+ LW+RCRGR  A    P   P
Sbjct: 61  AAFLWLRCRGRHAAALKRPYRVP 83


>01_06_0565 +
           30287253-30287502,30287522-30289010,30289133-30289277,
           30289679-30289729
          Length = 644

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = +2

Query: 350 CRGRRGACESYPVSPPSQMQRTAPGGFSGYFRSAS-RPGESHTGTELVTP 496
           C      C++ P SP S    T PGG  GY  + S  P    + T   TP
Sbjct: 147 CSSSPTPCDA-PPSPSSDTSPTTPGGGGGYSPTPSDTPPSPSSDTSPTTP 195



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +2

Query: 383 PVSPPSQMQRTAPGGFSGYFRSAS-RPGESHTGTELVTP 496
           P SP S    T PGG  GY  + S  P    +G+   TP
Sbjct: 235 PPSPSSDTSPTTPGGGGGYTPTPSDTPPSPSSGSSPTTP 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,130,941
Number of Sequences: 37544
Number of extensions: 324153
Number of successful extensions: 826
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)