Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K18
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92972-2|CAB07487.1|  336|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AL021566-4|CAA16505.1|  336|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z92785-1|CAB07199.2|  299|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U64835-3|AAO25999.1|  338|Caenorhabditis elegans Serpentine rece...    27   7.9  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    27   7.9  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z92972-2|CAB07487.1|  336|Caenorhabditis elegans Hypothetical
           protein T19C9.2 protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = -2

Query: 580 TRGNAFTHYPYLLYLRDQSPPNTIDKRARSDELRASVGLTRA*SAPEIPTKTPRSRPLHL 401
           T GN   H   L+Y    +PP T+ +  R D+    V +T   S P +    P    L  
Sbjct: 219 TSGNIIFHVACLVYYLYVAPPRTLSQTTRRDQKIFLVCVTAQTSVPLLVIIAPAMTVLLA 278

Query: 400 GW 395
            W
Sbjct: 279 SW 280


>AL021566-4|CAA16505.1|  336|Caenorhabditis elegans Hypothetical
           protein F08E10.6 protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = -2

Query: 580 TRGNAFTHYPYLLYLRDQSPPNTIDKRARSDELRASVGLTRA*SAPEIPTKTPRSRPLHL 401
           T GN   H   L+Y    +PP T+ +  R D+    V +T   S P +    P    L  
Sbjct: 219 TSGNIIFHVACLVYYLYIAPPRTLSQNTRRDQKIFLVCVTAQTSVPLLVIIAPAMIVLLA 278

Query: 400 GW 395
            W
Sbjct: 279 SW 280


>Z92785-1|CAB07199.2|  299|Caenorhabditis elegans Hypothetical
           protein F31E9.2 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/67 (20%), Positives = 31/67 (46%)
 Frame = +2

Query: 98  TYIIKTILFNTKLFSIYLQYSVMMSDHKYDQRDVFFCIYINIGTMQLLRMLLQFII*KYS 277
           T  + + L+      +Y+   V++  H+      FF +Y+  G M L   ++ F++ + +
Sbjct: 6   TLFLASTLYGLPSLILYILTFVVILRHRKTFDSSFFQLYVFDGIMNLFTYIMGFVVIRLA 65

Query: 278 T*CRGTC 298
           +   G C
Sbjct: 66  SVTCGEC 72


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/54 (27%), Positives = 20/54 (37%)
 Frame = +2

Query: 341 WVRCRGRRGACESYPVSPPSQMQRTAPGGFSGYFRSASRPGESHTGTELVTPCP 502
           W +C   +  C   P  PP +  +    G  G       PGE +T T     CP
Sbjct: 91  WCQCEPAKPVCPPGPPGPPGEPGQPGSAGPPG------PPGEDNTATFAPITCP 138


>U64835-3|AAO25999.1|  338|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 27 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 194 DVFFCIYINIGTMQLLRMLLQFII*KYST*CRGTCKY 304
           D FF +++  G + L+ +LL   + + +T  R TC+Y
Sbjct: 63  DSFFALHLVDGAVTLIFLLLDISLIRQTTYVRPTCEY 99


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 347  RCRGRRGACESYPVSPPSQMQRTAPGGFSGYFRSAS 454
            RC   +G C+  P    S+ Q + P GF G++ S S
Sbjct: 1478 RCDPVQGCCDCPPGRYGSRCQFSCPNGFYGWYCSQS 1513


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 347  RCRGRRGACESYPVSPPSQMQRTAPGGFSGYFRSAS 454
            RC   +G C+  P    S+ Q + P GF G++ S S
Sbjct: 1478 RCDPVQGCCDCPPGRYGSRCQFSCPNGFYGWYCSQS 1513


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,118,894
Number of Sequences: 27780
Number of extensions: 278160
Number of successful extensions: 717
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)