Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K17
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...   149   3e-37
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...   148   4e-37
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    29   0.27 
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    29   0.47 
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    28   0.62 
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   1.9  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   2.5  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    26   3.3  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    25   4.4  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   5.8  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   5.8  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   7.7  
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar...    25   7.7  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    25   7.7  
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    25   7.7  

>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score =  149 bits (360), Expect = 3e-37
 Identities = 73/114 (64%), Positives = 83/114 (72%)
 Frame = +3

Query: 36  MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 215
           MGRVRT             YY RLTLDF TNKRI +E+AII +K LRNKIAG+TTHLM+R
Sbjct: 1   MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60

Query: 216 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNI 377
           +    VRGIS KLQEEERER+D YVPEVS LE+D I VD DTKDMLK L + +I
Sbjct: 61  IQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score =  148 bits (359), Expect = 4e-37
 Identities = 76/132 (57%), Positives = 90/132 (68%)
 Frame = +3

Query: 36  MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 215
           MGRVRT             YY RLTLDF TNKRI +E+AII +K LRNKIAG+TTHLM+R
Sbjct: 1   MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60

Query: 216 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 395
           +    VRGIS KLQEEERER+D YVPEVS LE D + VD DTKDMLK L +  I  +++ 
Sbjct: 61  IQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVL 119

Query: 396 QPATQGGYGGRR 431
            PA Q  +  R+
Sbjct: 120 APAPQERFRRRQ 131


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 29.5 bits (63), Expect = 0.27
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 251 LNRDSSHLGVYETSHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIE 117
           +NR   +L +  +  ++ G    FV + LS+ND NF+  P +G E
Sbjct: 228 MNRPQRYLTI--SKQRLAGSDPYFV-RSLSKNDKNFIMIPTVGYE 269


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 12/57 (21%)
 Frame = +3

Query: 258 EEERERRDNYV------PEVSALEQDIIE------VDSDTKDMLKMLDFSNINGLQL 392
           EEE+ER  NY+      P +S +E +++       +++ +     M+D SN  GLQL
Sbjct: 265 EEEKERSKNYLFTKIASPLLSVVEDELLSKHLDDLLENQSTGFFSMIDSSNFEGLQL 321


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -3

Query: 236 SHLGVYETSHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIE----VKSKPSVVFF 87
           SH+ + +T+ +  G P   V KR+   D N L +    IE    +KS P VV +
Sbjct: 37  SHVYLVQTNSKTDGSPITAVLKRMYSPDENALRFVKTEIETMELLKSNPHVVSY 90


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 225 SQVRGISIKLQEEERERRDNYVPEV 299
           S V  ISIK QEEER+R+     E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 210 RRLIHSQVRGISIKLQEEERERRDNYVPEVS 302
           R+   S+ R  S KL EEER+RR  +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = -3

Query: 449 YNISLITSATVASLCSRLR*LQTINVTEVKH-LQHILGVRIDFNDILF*SRYFWDIIVTP 273
           +N ++     +     RL    T    +V+H L+ +L + I+  +     +YF   I TP
Sbjct: 439 FNFNVALPTCLVKERDRLTFDTTYKYIKVRHRLKALLVLSIENTENPEKRKYFEINIETP 498

Query: 272 FTLLFLKLNRDSSHLGVYETSHQ 204
             +L  +  +DS+ L  YE+S Q
Sbjct: 499 VRILSCRCVKDSTLLPPYESSSQ 521


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -3

Query: 215 TSHQMGGEPSNFVAKRLSRNDSN 147
           TS  MGG PS F    LSRN  N
Sbjct: 455 TSSIMGGNPSLFNGSVLSRNSVN 477


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 315 PVLEQILLGHNCHAF 271
           P+LEQ+L G+NC  F
Sbjct: 142 PMLEQVLNGYNCTIF 156


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +3

Query: 219 IHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQ 398
           IH+Q   +  +L EE      +  P +S +      VDS    + +  DF +   L L+ 
Sbjct: 463 IHAQPNAVYCRLMEEVGMTSKSISPSLSGISAPSASVDSSASRLAR--DFGS---LSLSS 517

Query: 399 PATQGGYGG 425
            +  G  GG
Sbjct: 518 NSLLGSLGG 526


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 249 KLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNIN 380
           K  E+++E  DNY     ALE ++   +++  ++LK  DF++ N
Sbjct: 845 KFIEKDQESIDNYEQNREALESEVATAEAEL-ELLKE-DFASEN 886


>SPAC17G8.05 |med20||mediator complex subunit
           Med20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 180

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 281 VTPFTLLFLKLNRDSSHLGVYETSHQMGGEP 189
           VTP TL FLK N + S L   + +  +  EP
Sbjct: 35  VTPKTLEFLKQNINPSMLACVDEATMIDAEP 65


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +3

Query: 171 LRNKIAGF----TTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSD 338
           +R +IA F      H ++R   S+    ++ + E   +R   Y+P +S   Q+ +EV ++
Sbjct: 372 IREQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQESVEVVNE 431

Query: 339 TKDMLKMLDFSNI 377
                K L  S++
Sbjct: 432 RYKRKKGLKDSDV 444


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 100 LGLLLTSIPIKGYVRKLLSFLLSLFATKLL 189
           +GLL TS  I    R  L   ++LFAT LL
Sbjct: 94  VGLLYTSASIYQMTRGSLIIFVALFATTLL 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,801,876
Number of Sequences: 5004
Number of extensions: 35016
Number of successful extensions: 135
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)