Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K17
         (472 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0174 + 13815478-13815903                                        139   9e-34
03_01_0066 - 537729-538163                                            137   5e-33
02_04_0449 + 23010099-23010317,23010873-23010934,23011399-230114...    31   0.47 
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427...    30   1.1  
05_04_0273 + 19632430-19632762,19633109-19633177,19633318-196333...    29   2.5  
03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484...    28   3.3  
12_02_0534 - 20103908-20105897,20106314-20107116                       27   7.6  
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999...    27   7.6  
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371...    27   7.6  

>10_07_0174 + 13815478-13815903
          Length = 141

 Score =  139 bits (337), Expect = 9e-34
 Identities = 67/128 (52%), Positives = 89/128 (69%)
 Frame = +3

Query: 36  MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 215
           MGRVRT             YY+R+TLDF TNK++ EE++I+P+K LRNK+AGFTTHLMRR
Sbjct: 1   MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRR 60

Query: 216 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 395
           +    VRGIS+KLQEEERERR ++VPE SALE + I VD +T +ML  L  +++ G++  
Sbjct: 61  IQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQ 120

Query: 396 QPATQGGY 419
           Q  +   Y
Sbjct: 121 QEVSAPTY 128


>03_01_0066 - 537729-538163
          Length = 144

 Score =  137 bits (331), Expect = 5e-33
 Identities = 67/122 (54%), Positives = 88/122 (72%)
 Frame = +3

Query: 36  MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 215
           MGRVRT             YY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR
Sbjct: 1   MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRR 60

Query: 216 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 395
           +    VRGIS+KLQEEERERR ++VP+ SALE D I VD +T DML  L  +++ G+ + 
Sbjct: 61  IQRGPVRGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VR 119

Query: 396 QP 401
           QP
Sbjct: 120 QP 121


>02_04_0449 +
           23010099-23010317,23010873-23010934,23011399-23011450,
           23011803-23011917,23012024-23012118,23012852-23012958,
           23013042-23013156,23014159-23014203,23014324-23014392
          Length = 292

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 400 GCVSCRPLMLLKSSIFNISLVSESTSMISCSRADT 296
           GC +      +K+ +F+I LVSE  S+I+C  A T
Sbjct: 148 GCGNAAVSKNVKNKVFSIDLVSEDPSVIACDMAHT 182


>04_04_0923 +
           29441740-29441980,29442321-29442401,29442630-29442719,
           29443123-29443203,29443721-29443774,29444062-29444111,
           29444542-29444623,29444734-29444838,29445514-29445641,
           29445726-29445797,29445887-29445937,29446029-29446100,
           29446201-29446278,29446446-29447270,29447648-29448556
          Length = 972

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +3

Query: 198 THLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNI 377
           T LM ++I SQ    SI   ++E     N+V    A +  +I   S T+D+   +D++N 
Sbjct: 311 TSLMEQIISSQP---SISEVQQEISTESNFVATPRAFQNSMILTTSRTEDIPFDMDYANT 367

Query: 378 NGLQ 389
           N ++
Sbjct: 368 NQVE 371


>05_04_0273 +
           19632430-19632762,19633109-19633177,19633318-19633374,
           19633534-19633597,19633887-19634102,19634761-19634803,
           19635267-19635345,19635467-19635559
          Length = 317

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = -3

Query: 254 KLNRDSSHLGVYET----SHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIEVKSKPSVVFF 87
           +LNRD + L V++     S Q   +P+N   K      SNF +   +G+    +P V   
Sbjct: 127 RLNRDVAKLEVFKKTLMQSLQEDEDPANTTPKARVSETSNFSSATSVGVPRPPRPHVFLP 186

Query: 86  DYN 78
            YN
Sbjct: 187 SYN 189


>03_03_0168 -
           15047383-15047847,15048085-15048192,15048313-15048464,
           15048555-15048752,15049553-15050856,15051281-15051354,
           15051458-15051492,15052853-15053015
          Length = 832

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 174 RNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKD-M 350
           R  + G    L+RRL  S    I  + +EEE E +DN   EV+       E+ S +++  
Sbjct: 109 RLPVKGLKDELVRRLFES----IQSE-KEEEEEEQDNETVEVNPAANQASEIQSVSQETT 163

Query: 351 LKMLDFSNINGLQLTQPAT 407
           + + +      +Q+TQ AT
Sbjct: 164 VSITEVHKETVVQVTQEAT 182


>12_02_0534 - 20103908-20105897,20106314-20107116
          Length = 930

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +3

Query: 228 QVRGISIKLQEEER---ERRDNYVPEVSALEQDIIEVDSDTKDMLK 356
           Q+ G+   + ++ +   ERRD Y+ + +A    +++VDS  + M +
Sbjct: 111 QIHGVMKDIMDQVKKVSERRDRYIVDDNAARPTVVDVDSRLEAMYR 156


>04_03_0037 -
           9991176-9991268,9991403-9991474,9991569-9991928,
           9992466-9992555,9992692-9992782,9993530-9993729,
           9998024-9998101,9998196-9998312,10000017-10000112,
           10000192-10000317,10000533-10000629,10000979-10001023,
           10002106-10002179,10002267-10002350,10002439-10002522,
           10002660-10002851,10003775-10003903,10004061-10004093,
           10004190-10004286,10004833-10004883,10005211-10005289,
           10005480-10005552,10005595-10005691,10006392-10006473,
           10008345-10008691,10010271-10010535,10010624-10010743,
           10010971-10011358
          Length = 1219

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
 Frame = +3

Query: 156 IPTKPLRNKIAG---FTTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIE 326
           + TK L+  +     ++  + +  +H ++ G   KL    +E++   + +V  LEQD++ 
Sbjct: 752 LSTKELQKMVQALPQYSDQIDKLALHVEIAG---KLNSTIKEQQ---LKDVGQLEQDLVF 805

Query: 327 VDSDTKDMLKM----LDFSNINGLQL 392
            D+ TK+++      LD S  N L+L
Sbjct: 806 GDAGTKELINFFRTHLDISRENKLRL 831


>01_01_0509 -
           3713109-3713244,3713689-3713733,3713959-3714015,
           3714088-3714438,3714585-3714862,3714939-3715289,
           3715378-3715647,3716035-3716103,3716194-3716304,
           3716503-3716583,3716825-3716914,3717032-3717262
          Length = 689

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
 Frame = +3

Query: 330 DSDTK---DMLKMLDFSNIN-GLQLTQPATQGGYGGR 428
           D D+K   D++K+L+ +N +   QL    ++GGYGGR
Sbjct: 530 DQDSKYASDLVKILEGANQSVSQQLRDMVSRGGYGGR 566


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,265,458
Number of Sequences: 37544
Number of extensions: 211092
Number of successful extensions: 544
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)