Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K13
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha...   175   2e-45
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom...    26   2.9  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    25   6.6  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   6.6  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   6.6  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    24   8.7  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          24   8.7  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    24   8.7  

>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score =  175 bits (427), Expect = 2e-45
 Identities = 85/142 (59%), Positives = 112/142 (78%), Gaps = 2/142 (1%)
 Frame = +2

Query: 8   ALGNDVDKVPVWVMRQAGRYLPEFQEVRSKHDFFTVCRTPELACEVTLQPLRRYEH-LDA 184
           A G +V++ PVW+MRQAGRYLPE+ ++R+K  FF +C+TPE ACE+TLQP+ R++  LDA
Sbjct: 10  AKGEEVERPPVWIMRQAGRYLPEYHKLRAKQSFFEMCQTPETACELTLQPVTRFKGLLDA 69

Query: 185 SIIFSDILVIPQALGMTVEMHPGVGPVFPQPLQDPSEIDKLQVDGAIS-RLQYVGDAITL 361
           +IIFSDILVIPQALGM V M    GP FP+PL  P +ID L+    IS +L YV DAI+L
Sbjct: 70  AIIFSDILVIPQALGMQVVMLEQKGPHFPKPLVVPEDIDLLEKTPNISAKLGYVMDAISL 129

Query: 362 TRHKIEGKVPLIGFTGAPFTLM 427
           TR K++G+VPL+GF+GAP+T+M
Sbjct: 130 TREKLDGQVPLMGFSGAPWTIM 151


>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 314 QLAIYLFQKDLEVVEETLVPHQDAFPQSYQELEG*QVY 201
           +LA+Y F++  E V+  ++  +D     YQ+L    VY
Sbjct: 167 RLALYKFEESTEQVKNRMIALKDVEADQYQQLTELIVY 204


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 391 WDFALNFMPCQCNCIADIL*PRYCSINLQFIYFRRILKWLRKHWSH 254
           WD+A N++   C+ + + L   +CS +L     RR  K L+K   H
Sbjct: 21  WDWAKNWVFWTCSYLLNFLYHHHCSRDL----IRRDTKKLKKKPKH 62


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +2

Query: 20  DVDKVPVWVMRQAGRYLPEFQEVRSKHDFFTVCRTPELACEVTLQPLRRYEHLDASIIF- 196
           ++DK   ++++    ++  F +   +   F +C T     E   Q   + E  D SI F 
Sbjct: 378 ELDKCVWFLLKNCDEFIENFSDFADEEYVFEICSTITSHSE---QIFNKLESWDMSIYFD 434

Query: 197 SDILVIPQALGMTVEMH 247
            D+    QA    V+ +
Sbjct: 435 KDLSECEQATNFAVQSY 451


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 278 LQDPSEIDKLQVDGAISRLQYVGD 349
           + DPS++D L +   +  LQYV D
Sbjct: 442 ISDPSDVDLLNLLSFLHALQYVHD 465


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 246 ILVWDQCFLNHFKILLK*INCKLMEQYLGY 335
           + +W   FLNH+K+ +  I  KL++  + +
Sbjct: 239 LYMWGVLFLNHWKLTVVIIVLKLVQDVVAF 268


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 423 NVKGAPVKPINGTLPSILCLVSVIASPTYCNLDIA 319
           N+     +  +G L  +L L  +  SPT CNL +A
Sbjct: 635 NILRVDAQTKDGALMDMLILQPIWRSPTSCNLMLA 669


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 293 QKDLEVVEETLVPHQDAFPQSYQELEG*QVY 201
           Q D+  V+E L   +D+FPQ Y  +EG   Y
Sbjct: 34  QADVICVQE-LKMQKDSFPQQYAVVEGFDSY 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,891,980
Number of Sequences: 5004
Number of extensions: 37923
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)