Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_K13
         (430 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of...    28   2.5  
U52000-2|AAK68677.1|  529|Caenorhabditis elegans Vang (van gogh/...    28   3.3  
U52000-1|AAA96091.1|  532|Caenorhabditis elegans Vang (van gogh/...    28   3.3  
U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synapti...    27   4.3  
U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synapti...    27   4.3  
U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical p...    27   4.3  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    27   4.3  
AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform...    27   4.3  
AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform...    27   4.3  
AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isofo...    27   4.3  
Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr...    26   10.0 
AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical...    26   10.0 
AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical...    26   10.0 
AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical ...    26   10.0 
AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical...    26   10.0 
AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical...    26   10.0 
AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical ...    26   10.0 

>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
            constitutive dauerformation protein 2 protein.
          Length = 1446

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 164  RYEHLDASIIFSDILVIPQALGMTVEMHPGVGPVFPQPLQDPSEID 301
            R + +D   IF DI   P ++GM   +HP V   F      P  ++
Sbjct: 1256 RPKFVDVVEIFQDIQDDPASVGMPFPIHPAVRATFAHSQSTPVSVE 1301


>U52000-2|AAK68677.1|  529|Caenorhabditis elegans Vang (van
           gogh/strabismus planarpolarity protein) homolog protein
           1, isoform b protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -2

Query: 378 SILCLVSVIASPTYCNLDI 322
           S+LC++SV+++P  C+L I
Sbjct: 105 SLLCIISVVSAPIMCSLPI 123


>U52000-1|AAA96091.1|  532|Caenorhabditis elegans Vang (van
           gogh/strabismus planarpolarity protein) homolog protein
           1, isoform a protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -2

Query: 378 SILCLVSVIASPTYCNLDI 322
           S+LC++SV+++P  C+L I
Sbjct: 108 SLLCIISVVSAPIMCSLPI 126


>U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synaptic
           protein protein1, isoform c protein.
          Length = 1211

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 429 PINVKGAPVKPINGTLPSILCLV 361
           P  V+GAPVK   G +P + C V
Sbjct: 539 PFKVRGAPVKRPPGFVPELACFV 561


>U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synaptic
           protein protein1, isoform a protein.
          Length = 1124

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 429 PINVKGAPVKPINGTLPSILCLV 361
           P  V+GAPVK   G +P + C V
Sbjct: 574 PFKVRGAPVKRPPGFVPELACFV 596


>U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical
           protein F27C1.11 protein.
          Length = 1037

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +2

Query: 278 LQDPSEIDKLQVD-GAISRLQYV 343
           L+DPS++ ++QVD G I RLQ V
Sbjct: 785 LRDPSQVPRIQVDFGNIGRLQKV 807


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 191 IFSDILVIPQALGMTVEMHPGVGPVFPQPLQDPSEID 301
           ++ +  + P  L + V+  P  GP  P P Q P++ID
Sbjct: 171 VYENNPIAPSELNVQVKRAPPQGPPPPPPPQAPADID 207


>AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform E
           protein.
          Length = 1133

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 429 PINVKGAPVKPINGTLPSILCLV 361
           P  V+GAPVK   G +P + C V
Sbjct: 574 PFKVRGAPVKRPPGFVPELACFV 596


>AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform D
           protein.
          Length = 1128

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 429 PINVKGAPVKPINGTLPSILCLV 361
           P  V+GAPVK   G +P + C V
Sbjct: 574 PFKVRGAPVKRPPGFVPELACFV 596


>AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isoform
           A protein.
          Length = 1124

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 429 PINVKGAPVKPINGTLPSILCLV 361
           P  V+GAPVK   G +P + C V
Sbjct: 574 PFKVRGAPVKRPPGFVPELACFV 596


>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical
           protein F31C3.3 protein.
          Length = 2029

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 101 DFFTVCRTPELACEVTLQPLRRYEHLDASIIFSD 202
           D F   R  E A E+   P RR+ HL+   ++ +
Sbjct: 451 DIFESQRVVEEAAEIHSSPTRRWSHLERERVYKE 484


>AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical
           protein Y45F10A.6c protein.
          Length = 1245

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 280 KWLRKHWSHTRMHFHSHTKSLRDDKYITKY 191
           K + +HW+H   HF    + L+ +K + +Y
Sbjct: 81  KEIEEHWNHVLQHFVPAIEPLQFEKDVRRY 110


>AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical
           protein Y45F10A.6a protein.
          Length = 1247

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 280 KWLRKHWSHTRMHFHSHTKSLRDDKYITKY 191
           K + +HW+H   HF    + L+ +K + +Y
Sbjct: 81  KEIEEHWNHVLQHFVPAIEPLQFEKDVRRY 110


>AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical
           protein Y45F10A.6b protein.
          Length = 1245

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 280 KWLRKHWSHTRMHFHSHTKSLRDDKYITKY 191
           K + +HW+H   HF    + L+ +K + +Y
Sbjct: 81  KEIEEHWNHVLQHFVPAIEPLQFEKDVRRY 110


>AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical
           protein Y45F10A.6c protein.
          Length = 1245

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 280 KWLRKHWSHTRMHFHSHTKSLRDDKYITKY 191
           K + +HW+H   HF    + L+ +K + +Y
Sbjct: 81  KEIEEHWNHVLQHFVPAIEPLQFEKDVRRY 110


>AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical
           protein Y45F10A.6a protein.
          Length = 1247

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 280 KWLRKHWSHTRMHFHSHTKSLRDDKYITKY 191
           K + +HW+H   HF    + L+ +K + +Y
Sbjct: 81  KEIEEHWNHVLQHFVPAIEPLQFEKDVRRY 110


>AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical
           protein Y45F10A.6b protein.
          Length = 1245

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 280 KWLRKHWSHTRMHFHSHTKSLRDDKYITKY 191
           K + +HW+H   HF    + L+ +K + +Y
Sbjct: 81  KEIEEHWNHVLQHFVPAIEPLQFEKDVRRY 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,488,785
Number of Sequences: 27780
Number of extensions: 213505
Number of successful extensions: 517
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)